Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL27047.1 | CEL27049.1 | SRM1_00372 | SRM1_00374 | Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | Putative assembly protein. | 0.805 |
| CEL27047.1 | mutY | SRM1_00372 | SRM1_00373 | Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.825 |
| CEL27049.1 | CEL27047.1 | SRM1_00374 | SRM1_00372 | Putative assembly protein. | Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.805 |
| CEL27049.1 | mutY | SRM1_00374 | SRM1_00373 | Putative assembly protein. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.812 |
| birA | exoA | SRM1_05200 | SRM1_05684 | Bifunctional ligase/repressor BirA. | Exodeoxyribonuclease. | 0.772 |
| birA | mutT | SRM1_05200 | SRM1_04361 | Bifunctional ligase/repressor BirA. | 8-oxo-dGTP diphosphatase. | 0.527 |
| birA | mutY | SRM1_05200 | SRM1_00373 | Bifunctional ligase/repressor BirA. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.563 |
| birA | xthA_1 | SRM1_05200 | SRM1_01960 | Bifunctional ligase/repressor BirA. | Exodeoxyribonuclease III. | 0.772 |
| birA | xthA_2 | SRM1_05200 | SRM1_03494 | Bifunctional ligase/repressor BirA. | Exodeoxyribonuclease III. | 0.772 |
| dnaN | exoA | SRM1_00057 | SRM1_05684 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease. | 0.933 |
| dnaN | mutY | SRM1_00057 | SRM1_00373 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.616 |
| dnaN | xthA_1 | SRM1_00057 | SRM1_01960 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.933 |
| dnaN | xthA_2 | SRM1_00057 | SRM1_03494 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.933 |
| exoA | birA | SRM1_05684 | SRM1_05200 | Exodeoxyribonuclease. | Bifunctional ligase/repressor BirA. | 0.772 |
| exoA | dnaN | SRM1_05684 | SRM1_00057 | Exodeoxyribonuclease. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.933 |
| exoA | mutY | SRM1_05684 | SRM1_00373 | Exodeoxyribonuclease. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.914 |
| hemN_2 | mutY | SRM1_05422 | SRM1_00373 | Oxygen-independent coproporphyrinogen-III oxidase 1; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.557 |
| mutT | birA | SRM1_04361 | SRM1_05200 | 8-oxo-dGTP diphosphatase. | Bifunctional ligase/repressor BirA. | 0.527 |
| mutT | mutY | SRM1_04361 | SRM1_00373 | 8-oxo-dGTP diphosphatase. | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.691 |
| mutY | CEL27047.1 | SRM1_00373 | SRM1_00372 | A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Putative Fe(2+)-trafficking protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. | 0.825 |
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