STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
todTResponse regulator protein TodT. (135 aa)    
Predicted Functional Partners:
fixL
Sensor protein FixL.
 
 
 
 0.775
tmoS
Sensor histidine kinase TmoS.
 
 
 0.731
bvgS_2
Virulence sensor protein BvgS precursor.
 
 
 0.710
cph2_14
Phytochrome-like protein cph2.
  
 
 0.680
CEL28905.1
Blue-light-activated protein.
 
 
 0.679
bvgS_3
Virulence sensor protein BvgS precursor.
 
 
 0.657
rcsC_3
Sensor histidine kinase RcsC.
 
 
 0.631
CEL27382.1
Flp/Fap pilin component.
  
    0.629
barA_3
Signal transduction histidine-protein kinase BarA.
 
 
 0.623
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.620
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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