Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gudPPutative glucarate transporter. (454 aa)    
Predicted Functional Partners:
garD
D-galactarate dehydratase.
 
  
 0.963
gudD
Glucarate dehydratase.
 
  
 0.714
CEL27544.1
Putative 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
     
 0.491
aldHT
Aldehyde dehydrogenase, thermostable.
       0.473
CEL27548.1
Membrane transport protein.
       0.467
CEL29302.1
Cupin domain protein.
 
     0.466
lutR_1
HTH-type transcriptional regulator LutR.
 
     0.452
bedA
Benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit.
 
  
 0.447
lutR_5
HTH-type transcriptional regulator LutR.
 
   
 0.446
CEL30712.1
2-keto-3-deoxy-galactonokinase.
 
  
 0.422
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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