Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL27565.1 | CEL27567.1 | SRM1_00895 | SRM1_00897 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.897 |
CEL27565.1 | fumC_1 | SRM1_00895 | SRM1_00896 | Hypothetical protein. | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.873 |
CEL27565.1 | sodB_1 | SRM1_00895 | SRM1_00898 | Hypothetical protein. | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.900 |
CEL27565.1 | zupT_1 | SRM1_00895 | SRM1_00899 | Hypothetical protein. | Zinc transporter ZupT. | 0.741 |
CEL27567.1 | CEL27565.1 | SRM1_00897 | SRM1_00895 | Tetratricopeptide repeat protein. | Hypothetical protein. | 0.897 |
CEL27567.1 | fumC_1 | SRM1_00897 | SRM1_00896 | Tetratricopeptide repeat protein. | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.814 |
CEL27567.1 | sodB_1 | SRM1_00897 | SRM1_00898 | Tetratricopeptide repeat protein. | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.952 |
CEL27567.1 | zupT_1 | SRM1_00897 | SRM1_00899 | Tetratricopeptide repeat protein. | Zinc transporter ZupT. | 0.809 |
acnA | fumC_1 | SRM1_01853 | SRM1_00896 | Aconitate hydratase 1. | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.699 |
acnA | rplC | SRM1_01853 | SRM1_05179 | Aconitate hydratase 1. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.793 |
acnA | rplM | SRM1_01853 | SRM1_04742 | Aconitate hydratase 1. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.742 |
acnA | rplO | SRM1_01853 | SRM1_05160 | Aconitate hydratase 1. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.769 |
acnA | rplQ | SRM1_01853 | SRM1_05154 | Aconitate hydratase 1. | 50S ribosomal protein L17. | 0.822 |
acnA | sodB_1 | SRM1_01853 | SRM1_00898 | Aconitate hydratase 1. | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.854 |
acnA | sodC | SRM1_01853 | SRM1_03216 | Aconitate hydratase 1. | Superoxide dismutase [Cu-Zn] precursor. | 0.506 |
fumC_1 | CEL27565.1 | SRM1_00896 | SRM1_00895 | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Hypothetical protein. | 0.873 |
fumC_1 | CEL27567.1 | SRM1_00896 | SRM1_00897 | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Tetratricopeptide repeat protein. | 0.814 |
fumC_1 | acnA | SRM1_00896 | SRM1_01853 | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Aconitate hydratase 1. | 0.699 |
fumC_1 | sodB_1 | SRM1_00896 | SRM1_00898 | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Superoxide dismutase [Mn/Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.877 |
fumC_1 | zupT_1 | SRM1_00896 | SRM1_00899 | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | Zinc transporter ZupT. | 0.718 |
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