STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEL27590.1Nickel uptake substrate-specific transmembrane region. (239 aa)    
Predicted Functional Partners:
fhuA_3
Ferrichrome-iron receptor precursor.
 
    0.817
CEL31060.1
Imelysin.
  
    0.640
yjcD
Putative ATP-dependent DNA helicase YjcD.
 
     0.571
mucD_1
Putative periplasmic serine endoprotease DegP-like precursor.
       0.564
gpmA_2
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase.
  
     0.547
csgB_2
Minor curlin subunit precursor.
 
     0.540
CEL30797.1
Hypothetical protein.
 
     0.482
apbE
Thiamine biosynthesis lipoprotein ApbE precursor.
  
    0.468
cirA_2
Colicin I receptor precursor.
 
     0.468
CEL31134.1
Putative E3 ubiquitin-protein ligase ipaH7.8.
  
     0.439
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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