ycgE_1 protein (Pseudomonas fluorescens) - STRING interaction network

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Score

ycgE_1

HTH-type transcriptional repressor YcgE. (319 aa)

Predicted Functional Partners:

gltB

0.838

rpoB

0.644

rpoA

0.625

rpoC

0.620

rpoZ

0.620

fumA

0.611

phrB

0.609

gmr_1

0.591

queF

0.584

cobL

0.537

Your Current Organism:

Pseudomonas fluorescens

NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cobL	gltB	SRM1_00664	SRM1_00466	Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].	Glutamate synthase [NADPH] large chain precursor.	0.667
cobL	ycgE_1	SRM1_00664	SRM1_00941	Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].	HTH-type transcriptional repressor YcgE.	0.537
fumA	gltB	SRM1_04395	SRM1_00466	Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Glutamate synthase [NADPH] large chain precursor.	0.486
fumA	ycgE_1	SRM1_04395	SRM1_00941	Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	HTH-type transcriptional repressor YcgE.	0.611
gltB	cobL	SRM1_00466	SRM1_00664	Glutamate synthase [NADPH] large chain precursor.	Precorrin-6Y C(5,15)-methyltransferase [decarboxylating].	0.667
gltB	fumA	SRM1_00466	SRM1_04395	Glutamate synthase [NADPH] large chain precursor.	Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.486
gltB	rpoB	SRM1_00466	SRM1_05186	Glutamate synthase [NADPH] large chain precursor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.631
gltB	rpoC	SRM1_00466	SRM1_05185	Glutamate synthase [NADPH] large chain precursor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.700
gltB	ycgE_1	SRM1_00466	SRM1_00941	Glutamate synthase [NADPH] large chain precursor.	HTH-type transcriptional repressor YcgE.	0.838
gmr_1	ycgE_1	SRM1_00514	SRM1_00941	Cyclic di-GMP phosphodiesterase Gmr.	HTH-type transcriptional repressor YcgE.	0.591
phrB	ycgE_1	SRM1_04786	SRM1_00941	Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.	HTH-type transcriptional repressor YcgE.	0.609
queF	ycgE_1	SRM1_03764	SRM1_00941	NADPH-dependent 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).	HTH-type transcriptional repressor YcgE.	0.584
rpoA	rpoB	SRM1_05155	SRM1_05186	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	SRM1_05155	SRM1_05185	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoZ	SRM1_05155	SRM1_05690	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.998
rpoA	ycgE_1	SRM1_05155	SRM1_00941	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	HTH-type transcriptional repressor YcgE.	0.625
rpoB	gltB	SRM1_05186	SRM1_00466	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Glutamate synthase [NADPH] large chain precursor.	0.631
rpoB	rpoA	SRM1_05186	SRM1_05155	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	SRM1_05186	SRM1_05185	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	SRM1_05186	SRM1_05690	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.995

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