Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL27620.1 | carC | SRM1_00950 | SRM1_00949 | Putative short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2, 4-dienoic acid hydrolase. | 0.609 |
CEL27620.1 | novR | SRM1_00950 | SRM1_00948 | Putative short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Decarboxylase NovR. | 0.689 |
CEL28130.1 | novR | SRM1_01464 | SRM1_00948 | Hypothetical protein. | Decarboxylase NovR. | 0.596 |
CEL28594.1 | novR | SRM1_01933 | SRM1_00948 | Peptide synthase. | Decarboxylase NovR. | 0.718 |
CEL30043.1 | novR | SRM1_03397 | SRM1_00948 | Cytochrome c-554 precursor. | Decarboxylase NovR. | 0.564 |
CEL31626.1 | cfiA | SRM1_04995 | SRM1_05787 | Hypothetical protein. | 2-oxoglutarate carboxylase large subunit. | 0.679 |
CEL31626.1 | novR | SRM1_04995 | SRM1_00948 | Hypothetical protein. | Decarboxylase NovR. | 0.724 |
carC | CEL27620.1 | SRM1_00949 | SRM1_00950 | 2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2, 4-dienoic acid hydrolase. | Putative short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.609 |
carC | novR | SRM1_00949 | SRM1_00948 | 2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2, 4-dienoic acid hydrolase. | Decarboxylase NovR. | 0.816 |
cfiA | CEL31626.1 | SRM1_05787 | SRM1_04995 | 2-oxoglutarate carboxylase large subunit. | Hypothetical protein. | 0.679 |
cfiA | novR | SRM1_05787 | SRM1_00948 | 2-oxoglutarate carboxylase large subunit. | Decarboxylase NovR. | 0.534 |
lon_1 | novR | SRM1_03534 | SRM1_00948 | Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | Decarboxylase NovR. | 0.573 |
metH | mtnD | SRM1_02950 | SRM1_01807 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Acireductone dioxygenase. | 0.748 |
metH | novR | SRM1_02950 | SRM1_00948 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Decarboxylase NovR. | 0.591 |
mtnD | metH | SRM1_01807 | SRM1_02950 | Acireductone dioxygenase. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.748 |
mtnD | novR | SRM1_01807 | SRM1_00948 | Acireductone dioxygenase. | Decarboxylase NovR. | 0.603 |
novR | CEL27620.1 | SRM1_00948 | SRM1_00950 | Decarboxylase NovR. | Putative short-chain type dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.689 |
novR | CEL28130.1 | SRM1_00948 | SRM1_01464 | Decarboxylase NovR. | Hypothetical protein. | 0.596 |
novR | CEL28594.1 | SRM1_00948 | SRM1_01933 | Decarboxylase NovR. | Peptide synthase. | 0.718 |
novR | CEL30043.1 | SRM1_00948 | SRM1_03397 | Decarboxylase NovR. | Cytochrome c-554 precursor. | 0.564 |
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