Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL27701.1 | holC | SRM1_01031 | SRM1_01032 | Hypothetical protein. | DNA polymerase III subunit chi. | 0.805 |
| CEL27701.1 | pepA_1 | SRM1_01031 | SRM1_01033 | Hypothetical protein. | Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.658 |
| CEL28372.1 | dnaE | SRM1_01710 | SRM1_01144 | Single-stranded DNA-binding protein. | DNA polymerase III subunit alpha. | 0.740 |
| CEL28372.1 | dnaE2_2 | SRM1_01710 | SRM1_02978 | Single-stranded DNA-binding protein. | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.740 |
| CEL28372.1 | dnaN | SRM1_01710 | SRM1_00057 | Single-stranded DNA-binding protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.400 |
| CEL28372.1 | dnaX | SRM1_01710 | SRM1_01899 | Single-stranded DNA-binding protein. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.840 |
| CEL28372.1 | holC | SRM1_01710 | SRM1_01032 | Single-stranded DNA-binding protein. | DNA polymerase III subunit chi. | 0.810 |
| dnaE | CEL28372.1 | SRM1_01144 | SRM1_01710 | DNA polymerase III subunit alpha. | Single-stranded DNA-binding protein. | 0.740 |
| dnaE | dnaN | SRM1_01144 | SRM1_00057 | DNA polymerase III subunit alpha. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.879 |
| dnaE | dnaX | SRM1_01144 | SRM1_01899 | DNA polymerase III subunit alpha. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.882 |
| dnaE | holA | SRM1_01144 | SRM1_05034 | DNA polymerase III subunit alpha. | DNA polymerase III subunit delta. | 0.858 |
| dnaE | holB | SRM1_01144 | SRM1_04099 | DNA polymerase III subunit alpha. | DNA polymerase III subunit delta'. | 0.858 |
| dnaE | holC | SRM1_01144 | SRM1_01032 | DNA polymerase III subunit alpha. | DNA polymerase III subunit chi. | 0.832 |
| dnaE | ssb | SRM1_01144 | SRM1_05149 | DNA polymerase III subunit alpha. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.885 |
| dnaE2_2 | CEL28372.1 | SRM1_02978 | SRM1_01710 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | Single-stranded DNA-binding protein. | 0.740 |
| dnaE2_2 | dnaN | SRM1_02978 | SRM1_00057 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.835 |
| dnaE2_2 | dnaX | SRM1_02978 | SRM1_01899 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.853 |
| dnaE2_2 | holA | SRM1_02978 | SRM1_05034 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit delta. | 0.858 |
| dnaE2_2 | holB | SRM1_02978 | SRM1_04099 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit delta'. | 0.837 |
| dnaE2_2 | holC | SRM1_02978 | SRM1_01032 | Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | DNA polymerase III subunit chi. | 0.832 |
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