Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
barA_3 | bvgS_1 | SRM1_04168 | SRM1_01084 | Signal transduction histidine-protein kinase BarA. | Virulence sensor protein BvgS precursor. | 0.991 |
barA_3 | bvgS_2 | SRM1_04168 | SRM1_01956 | Signal transduction histidine-protein kinase BarA. | Virulence sensor protein BvgS precursor. | 0.993 |
barA_3 | bvgS_3 | SRM1_04168 | SRM1_03874 | Signal transduction histidine-protein kinase BarA. | Virulence sensor protein BvgS precursor. | 0.993 |
barA_3 | degS_2 | SRM1_04168 | SRM1_05230 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.887 |
barA_3 | degU_1 | SRM1_04168 | SRM1_01195 | Signal transduction histidine-protein kinase BarA. | Transcriptional regulatory protein DegU. | 0.762 |
barA_3 | pleC | SRM1_04168 | SRM1_01658 | Signal transduction histidine-protein kinase BarA. | Non-motile and phage-resistance protein. | 0.991 |
barA_3 | rcsC_3 | SRM1_04168 | SRM1_02222 | Signal transduction histidine-protein kinase BarA. | Sensor histidine kinase RcsC. | 0.993 |
barA_3 | rpfC_2 | SRM1_04168 | SRM1_03082 | Signal transduction histidine-protein kinase BarA. | Sensory/regulatory protein RpfC. | 0.642 |
bvgS_1 | barA_3 | SRM1_01084 | SRM1_04168 | Virulence sensor protein BvgS precursor. | Signal transduction histidine-protein kinase BarA. | 0.991 |
bvgS_1 | bvgS_2 | SRM1_01084 | SRM1_01956 | Virulence sensor protein BvgS precursor. | Virulence sensor protein BvgS precursor. | 0.992 |
bvgS_1 | bvgS_3 | SRM1_01084 | SRM1_03874 | Virulence sensor protein BvgS precursor. | Virulence sensor protein BvgS precursor. | 0.991 |
bvgS_1 | degS_1 | SRM1_01084 | SRM1_03855 | Virulence sensor protein BvgS precursor. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.586 |
bvgS_1 | degS_2 | SRM1_01084 | SRM1_05230 | Virulence sensor protein BvgS precursor. | Signal transduction histidine-protein kinase/phosphatase DegS. | 0.922 |
bvgS_1 | degU_1 | SRM1_01084 | SRM1_01195 | Virulence sensor protein BvgS precursor. | Transcriptional regulatory protein DegU. | 0.633 |
bvgS_1 | pleC | SRM1_01084 | SRM1_01658 | Virulence sensor protein BvgS precursor. | Non-motile and phage-resistance protein. | 0.993 |
bvgS_1 | rcsC_3 | SRM1_01084 | SRM1_02222 | Virulence sensor protein BvgS precursor. | Sensor histidine kinase RcsC. | 0.990 |
bvgS_1 | rpfC_2 | SRM1_01084 | SRM1_03082 | Virulence sensor protein BvgS precursor. | Sensory/regulatory protein RpfC. | 0.434 |
bvgS_2 | barA_3 | SRM1_01956 | SRM1_04168 | Virulence sensor protein BvgS precursor. | Signal transduction histidine-protein kinase BarA. | 0.993 |
bvgS_2 | bvgS_1 | SRM1_01956 | SRM1_01084 | Virulence sensor protein BvgS precursor. | Virulence sensor protein BvgS precursor. | 0.992 |
bvgS_2 | bvgS_3 | SRM1_01956 | SRM1_03874 | Virulence sensor protein BvgS precursor. | Virulence sensor protein BvgS precursor. | 0.992 |
page 1 of 5