Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL29401.1 | CEL31632.1 | SRM1_02752 | SRM1_05001 | ATP-dependent DNA helicase DinG. | Type I restriction enzyme EcoKI subunit R. | 0.999 |
| CEL29401.1 | dnaN | SRM1_02752 | SRM1_00057 | ATP-dependent DNA helicase DinG. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.907 |
| CEL29401.1 | polA | SRM1_02752 | SRM1_00115 | ATP-dependent DNA helicase DinG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.958 |
| CEL29401.1 | rapA_1 | SRM1_02752 | SRM1_01274 | ATP-dependent DNA helicase DinG. | RNA polymerase-associated protein RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.836 |
| CEL29401.1 | rpoA | SRM1_02752 | SRM1_05155 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| CEL29401.1 | rpoB | SRM1_02752 | SRM1_05186 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
| CEL29401.1 | rpoC | SRM1_02752 | SRM1_05185 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| CEL29401.1 | rpoZ | SRM1_02752 | SRM1_05690 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.997 |
| CEL31632.1 | CEL29401.1 | SRM1_05001 | SRM1_02752 | Type I restriction enzyme EcoKI subunit R. | ATP-dependent DNA helicase DinG. | 0.999 |
| CEL31632.1 | dinG | SRM1_05001 | SRM1_01240 | Type I restriction enzyme EcoKI subunit R. | Putative ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.999 |
| CEL31632.1 | dnaN | SRM1_05001 | SRM1_00057 | Type I restriction enzyme EcoKI subunit R. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.831 |
| CEL31632.1 | polA | SRM1_05001 | SRM1_00115 | Type I restriction enzyme EcoKI subunit R. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| CEL31632.1 | rapA_1 | SRM1_05001 | SRM1_01274 | Type I restriction enzyme EcoKI subunit R. | RNA polymerase-associated protein RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.974 |
| CEL31632.1 | rpoA | SRM1_05001 | SRM1_05155 | Type I restriction enzyme EcoKI subunit R. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CEL31632.1 | rpoB | SRM1_05001 | SRM1_05186 | Type I restriction enzyme EcoKI subunit R. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CEL31632.1 | rpoC | SRM1_05001 | SRM1_05185 | Type I restriction enzyme EcoKI subunit R. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| CEL31632.1 | rpoZ | SRM1_05001 | SRM1_05690 | Type I restriction enzyme EcoKI subunit R. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| dinG | CEL31632.1 | SRM1_01240 | SRM1_05001 | Putative ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | Type I restriction enzyme EcoKI subunit R. | 0.999 |
| dinG | dnaN | SRM1_01240 | SRM1_00057 | Putative ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.925 |
| dinG | polA | SRM1_01240 | SRM1_00115 | Putative ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.958 |
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