Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rssA_1Swarming motility regulation sensor protein RssA. (461 aa)    
Predicted Functional Partners:
tctD_2
Transcriptional regulatory protein tctD.
 
 0.999
nicP_2
Porin-like protein NicP precursor.
     
 0.896
CEL28905.1
Blue-light-activated protein.
   
 0.879
CEL28008.1
Tripartite tricarboxylate transporter TctB family protein.
 
   
 0.874
CEL28009.1
Tripartite tricarboxylate transporter family receptor.
 
   
 0.869
qseB_1
Transcriptional regulatory protein QseB.
 
 0.852
qseB_2
Transcriptional regulatory protein QseB.
 
 0.852
CEL28007.1
Tripartite tricarboxylate transporter TctA family protein.
 
   
 0.835
qseB_4
Transcriptional regulatory protein QseB.
 
 0.821
CEL28006.1
Putative ammonia monooxygenase.
 
     0.813
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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