Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
apxIB_2Toxin RTX-I translocation ATP-binding protein. (720 aa)    
Predicted Functional Partners:
prsE_2
Type I secretion system membrane fusion protein PrsE.
 0.992
prsE_1
Type I secretion system membrane fusion protein PrsE.
 0.970
aprE
Type I secretion system membrane fusion protein.
 
 0.954
bepC_2
Outer membrane efflux protein BepC precursor.
 
 
 0.934
apxIB_1
Toxin RTX-I translocation ATP-binding protein.
     
  0.910
bepC_1
Outer membrane efflux protein BepC precursor.
 
 
 0.877
CEL26864.1
Hypothetical protein.
 
  
 0.835
CEL28115.1
Hypothetical protein.
 
  
 0.831
cya_1
Bifunctional hemolysin/adenylate cyclase precursor.
 
  
 0.825
CEL26866.1
Hypothetical protein.
 
     0.787
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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