Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
soj_3Sporulation initiation inhibitor protein Soj. (281 aa)    
Predicted Functional Partners:
CEL28380.1
Prophage CP4-57 regulatory protein (AlpA).
 
     0.936
CEL28377.1
Hypothetical protein.
  
 
 0.846
parB
Putative chromosome-partitioning protein ParB; Belongs to the ParB family.
 
 
 0.841
CEL28359.1
TraM recognition site of TraD and TraG.
 
   
 0.788
CEL28348.1
F pilus assembly Type-IV secretion system for plasmid transfer.
 
   
 0.783
CEL28337.1
Putative helicase.
 
   
 0.780
CEL28361.1
Hypothetical protein.
 
     0.762
CEL31714.1
Prophage CP4-57 regulatory protein (AlpA).
 
     0.746
topB_1
DNA topoisomerase 3.
 
   
 0.684
CEL28375.1
Hypothetical protein.
       0.640
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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