Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL28894.1 | nfuA | SRM1_02242 | SRM1_02947 | Hypothetical protein. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.742 |
| CEL28894.1 | prc | SRM1_02242 | SRM1_01756 | Hypothetical protein. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.435 |
| CEL28894.1 | topA | SRM1_02242 | SRM1_03787 | Hypothetical protein. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.740 |
| amiC_1 | envC | SRM1_00579 | SRM1_00385 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Murein hydrolase activator EnvC precursor. | 0.756 |
| amiC_1 | pheT | SRM1_00579 | SRM1_02094 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.491 |
| amiC_1 | prc | SRM1_00579 | SRM1_01756 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.470 |
| amiC_1 | rseP | SRM1_00579 | SRM1_01136 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Regulator of sigma-E protease RseP. | 0.418 |
| amiC_1 | sohB | SRM1_00579 | SRM1_02956 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | Putative protease SohB. | 0.465 |
| amiC_1 | topA | SRM1_00579 | SRM1_03787 | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.433 |
| envC | amiC_1 | SRM1_00385 | SRM1_00579 | Murein hydrolase activator EnvC precursor. | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | 0.756 |
| envC | prc | SRM1_00385 | SRM1_01756 | Murein hydrolase activator EnvC precursor. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.452 |
| nfuA | CEL28894.1 | SRM1_02947 | SRM1_02242 | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | Hypothetical protein. | 0.742 |
| nfuA | prc | SRM1_02947 | SRM1_01756 | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.451 |
| nfuA | topA | SRM1_02947 | SRM1_03787 | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.659 |
| pheT | amiC_1 | SRM1_02094 | SRM1_00579 | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | N-acetylmuramoyl-L-alanine amidase AmiC precursor. | 0.491 |
| pheT | prc | SRM1_02094 | SRM1_01756 | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.533 |
| pheT | rseP | SRM1_02094 | SRM1_01136 | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Regulator of sigma-E protease RseP. | 0.512 |
| pheT | topA | SRM1_02094 | SRM1_03787 | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.781 |
| ppsC_1 | prc | SRM1_01757 | SRM1_01756 | Phthiocerol synthesis polyketide synthase type I PpsC. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.571 |
| ppsC_1 | yfgF | SRM1_01757 | SRM1_01755 | Phthiocerol synthesis polyketide synthase type I PpsC. | Cyclic di-GMP phosphodiesterase YfgF. | 0.412 |
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