Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
potA_2Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (329 aa)    
Predicted Functional Partners:
cysW_2
Sulfate transport system permease protein CysW.
 0.999
cysW_3
Sulfate transport system permease protein CysW.
 
 
 0.997
CEL28425.1
Hypothetical protein.
 
 
 0.995
ydcV_4
Inner membrane ABC transporter permease protein YdcV.
 
 0.985
CEL28424.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
    0.964
potH_2
Putrescine transport system permease protein PotH.
 
 0.954
potH_3
Putrescine transport system permease protein PotH.
 
 0.925
ydcV_3
Inner membrane ABC transporter permease protein YdcV.
 
 0.896
ydcV_5
Inner membrane ABC transporter permease protein YdcV.
 
 0.877
dppC
Dipeptide transport system permease protein DppC.
      0.871
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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