Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL28465.1 | aroC | SRM1_01803 | SRM1_01804 | Alpha/beta hydrolase family protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.592 |
| CEL28465.1 | hcaT | SRM1_01803 | SRM1_01805 | Alpha/beta hydrolase family protein. | Putative 3-phenylpropionic acid transporter. | 0.550 |
| CEL28465.1 | mtnB | SRM1_01803 | SRM1_01806 | Alpha/beta hydrolase family protein. | Methylthioribulose-1-phosphate dehydratase. | 0.507 |
| CEL28465.1 | mtnC | SRM1_01803 | SRM1_01808 | Alpha/beta hydrolase family protein. | Enolase-phosphatase E1. | 0.405 |
| CEL28465.1 | mtnD | SRM1_01803 | SRM1_01807 | Alpha/beta hydrolase family protein. | Acireductone dioxygenase. | 0.553 |
| aroC | CEL28465.1 | SRM1_01804 | SRM1_01803 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Alpha/beta hydrolase family protein. | 0.592 |
| aroC | hcaT | SRM1_01804 | SRM1_01805 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Putative 3-phenylpropionic acid transporter. | 0.723 |
| aroC | mtnB | SRM1_01804 | SRM1_01806 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Methylthioribulose-1-phosphate dehydratase. | 0.725 |
| aroC | mtnC | SRM1_01804 | SRM1_01808 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Enolase-phosphatase E1. | 0.543 |
| aroC | mtnD | SRM1_01804 | SRM1_01807 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Acireductone dioxygenase. | 0.541 |
| hcaT | CEL28465.1 | SRM1_01805 | SRM1_01803 | Putative 3-phenylpropionic acid transporter. | Alpha/beta hydrolase family protein. | 0.550 |
| hcaT | aroC | SRM1_01805 | SRM1_01804 | Putative 3-phenylpropionic acid transporter. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.723 |
| hcaT | mtnB | SRM1_01805 | SRM1_01806 | Putative 3-phenylpropionic acid transporter. | Methylthioribulose-1-phosphate dehydratase. | 0.845 |
| hcaT | mtnC | SRM1_01805 | SRM1_01808 | Putative 3-phenylpropionic acid transporter. | Enolase-phosphatase E1. | 0.670 |
| hcaT | mtnD | SRM1_01805 | SRM1_01807 | Putative 3-phenylpropionic acid transporter. | Acireductone dioxygenase. | 0.670 |
| metH | mtnA | SRM1_02950 | SRM1_04026 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). | 0.771 |
| metH | mtnB | SRM1_02950 | SRM1_01806 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Methylthioribulose-1-phosphate dehydratase. | 0.591 |
| metH | mtnD | SRM1_02950 | SRM1_01807 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Acireductone dioxygenase. | 0.748 |
| metH | novR | SRM1_02950 | SRM1_00948 | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Decarboxylase NovR. | 0.591 |
| mtnA | metH | SRM1_04026 | SRM1_02950 | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.771 |
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