Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL29964.1 | acnA | SRM1_03318 | SRM1_01853 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | Aconitate hydratase 1. | 0.606 |
CEL29964.1 | bcpA | SRM1_03318 | SRM1_04518 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.714 |
CEL29964.1 | gltA_1 | SRM1_03318 | SRM1_01606 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | Citrate synthase; Belongs to the citrate synthase family. | 0.591 |
CEL29964.1 | mii | SRM1_03318 | SRM1_01854 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | 3-methylitaconate isomerase. | 0.614 |
CEL29964.1 | prpC | SRM1_03318 | SRM1_01852 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.834 |
CEL29964.1 | prpD | SRM1_03318 | SRM1_01855 | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | 2-methylcitrate dehydratase. | 0.868 |
acnA | CEL29964.1 | SRM1_01853 | SRM1_03318 | Aconitate hydratase 1. | Oxaloacetate decarboxylase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase family. Oxaloacetate decarboxylase subfamily. | 0.606 |
acnA | acnB | SRM1_01853 | SRM1_03188 | Aconitate hydratase 1. | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | 0.513 |
acnA | bcpA | SRM1_01853 | SRM1_04518 | Aconitate hydratase 1. | Carboxyvinyl-carboxyphosphonate phosphorylmutase. | 0.423 |
acnA | fumA | SRM1_01853 | SRM1_04395 | Aconitate hydratase 1. | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.734 |
acnA | gltA_1 | SRM1_01853 | SRM1_01606 | Aconitate hydratase 1. | Citrate synthase; Belongs to the citrate synthase family. | 0.898 |
acnA | mii | SRM1_01853 | SRM1_01854 | Aconitate hydratase 1. | 3-methylitaconate isomerase. | 0.981 |
acnA | prpB | SRM1_01853 | SRM1_01851 | Aconitate hydratase 1. | Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family. | 0.811 |
acnA | prpC | SRM1_01853 | SRM1_01852 | Aconitate hydratase 1. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.980 |
acnA | prpD | SRM1_01853 | SRM1_01855 | Aconitate hydratase 1. | 2-methylcitrate dehydratase. | 0.676 |
acnB | acnA | SRM1_03188 | SRM1_01853 | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | Aconitate hydratase 1. | 0.513 |
acnB | fumA | SRM1_03188 | SRM1_04395 | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.876 |
acnB | gltA_1 | SRM1_03188 | SRM1_01606 | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | Citrate synthase; Belongs to the citrate synthase family. | 0.919 |
acnB | prpC | SRM1_03188 | SRM1_01852 | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.880 |
acnB | prpD | SRM1_03188 | SRM1_01855 | Aconitate hydratase 2; Belongs to the aconitase/IPM isomerase family. | 2-methylcitrate dehydratase. | 0.553 |
page 1 of 4