Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL26827.1 | CEL27224.1 | SRM1_00148 | SRM1_00549 | Hypothetical protein. | Putative dehydrogenase. | 0.449 |
CEL26827.1 | rmf | SRM1_00148 | SRM1_01876 | Hypothetical protein. | Ribosome modulation factor. | 0.723 |
CEL27224.1 | CEL26827.1 | SRM1_00549 | SRM1_00148 | Putative dehydrogenase. | Hypothetical protein. | 0.449 |
CEL27224.1 | rmf | SRM1_00549 | SRM1_01876 | Putative dehydrogenase. | Ribosome modulation factor. | 0.686 |
CEL27636.1 | rmf | SRM1_00966 | SRM1_01876 | Sigma 54 modulation protein / S30EA ribosomal protein. | Ribosome modulation factor. | 0.813 |
CEL27636.1 | rpmC | SRM1_00966 | SRM1_05171 | Sigma 54 modulation protein / S30EA ribosomal protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.822 |
CEL27636.1 | rpsE | SRM1_00966 | SRM1_05162 | Sigma 54 modulation protein / S30EA ribosomal protein. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.823 |
CEL27636.1 | rpsR | SRM1_00966 | SRM1_00596 | Sigma 54 modulation protein / S30EA ribosomal protein. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.801 |
CEL27636.1 | rpsU | SRM1_00966 | SRM1_05250 | Sigma 54 modulation protein / S30EA ribosomal protein. | 30S ribosomal protein S21. | 0.837 |
CEL27759.1 | minE | SRM1_01089 | SRM1_01771 | YaeQ protein. | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | 0.743 |
CEL27759.1 | rmf | SRM1_01089 | SRM1_01876 | YaeQ protein. | Ribosome modulation factor. | 0.656 |
hpf | rmf | SRM1_00903 | SRM1_01876 | Ribosome hibernation promoting factor. | Ribosome modulation factor. | 0.977 |
hpf | rpmC | SRM1_00903 | SRM1_05171 | Ribosome hibernation promoting factor. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.910 |
hpf | rpsE | SRM1_00903 | SRM1_05162 | Ribosome hibernation promoting factor. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.913 |
hpf | rpsR | SRM1_00903 | SRM1_00596 | Ribosome hibernation promoting factor. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.899 |
hpf | rpsU | SRM1_00903 | SRM1_05250 | Ribosome hibernation promoting factor. | 30S ribosomal protein S21. | 0.927 |
minE | CEL27759.1 | SRM1_01771 | SRM1_01089 | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | YaeQ protein. | 0.743 |
minE | rmf | SRM1_01771 | SRM1_01876 | Cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell. | Ribosome modulation factor. | 0.654 |
rmf | CEL26827.1 | SRM1_01876 | SRM1_00148 | Ribosome modulation factor. | Hypothetical protein. | 0.723 |
rmf | CEL27224.1 | SRM1_01876 | SRM1_00549 | Ribosome modulation factor. | Putative dehydrogenase. | 0.686 |
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