STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfHPutative HTH-type transcriptional regulator YdfH. (254 aa)    
Predicted Functional Partners:
lutR_8
HTH-type transcriptional regulator LutR.
 
  
 0.839
lutR_7
HTH-type transcriptional regulator LutR.
 
  
 0.834
lutR_6
HTH-type transcriptional regulator LutR.
 
  
 0.768
pdhR
Pyruvate dehydrogenase complex repressor.
 
  
 0.738
lutR_1
HTH-type transcriptional regulator LutR.
 
  
 0.736
lutR_4
HTH-type transcriptional regulator LutR.
 
  
 0.719
yjiR_2
Putative HTH-type transcriptional regulator YjiR.
 
  
 0.639
ydcO_1
Inner membrane protein YdcO.
     
 0.592
CEL32180.1
Bacterial regulatory proteins, tetR family.
  
  
 0.572
gcvA_4
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.571
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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