STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEL28921.14-hydroxyproline epimerase; Belongs to the proline racemase family. (308 aa)    
Predicted Functional Partners:
dapA_2
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.915
CEL28919.1
Alpha-ketoglutaric semialdehyde dehydrogenase.
 
 
 0.879
dadA_1
D-amino acid dehydrogenase small subunit.
 
  
 0.858
CEL29693.1
Alpha-ketoglutaric semialdehyde dehydrogenase.
 
 
 0.782
btr
HTH-type transcriptional activator Btr.
 
     0.781
yveA
Aspartate-proton symporter.
       0.738
ala
Alanine dehydrogenase.
 
   
 0.670
hcnB
Hydrogen cyanide synthase subunit HcnB.
 
   
 0.575
hcnC_2
Hydrogen cyanide synthase subunit HcnC precursor.
 
  
 0.533
CEL28956.1
TspO/MBR family protein.
   
    0.495
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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