STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEL29126.1Putative acetyltransferase. (311 aa)    
Predicted Functional Partners:
paaK
Phenylacetate-coenzyme A ligase.
 
    0.951
CEL29129.1
Acyl-protein synthetase, LuxE.
 
    0.924
CEL29128.1
Phenylacetate-coenzyme A ligase.
 
    0.920
mdfA
Multidrug transporter MdfA.
 
     0.703
tnsB
Transposon Tn7 transposition protein TnsB.
 
     0.574
pgdA_4
Peptidoglycan-N-acetylglucosamine deacetylase.
 
     0.548
pgdA_3
Peptidoglycan deacetylase.
 
     0.514
tnsC
Transposon Tn7 transposition protein TnsC.
  
     0.513
tnsA
Transposon Tn7 transposition protein TnsA.
  
     0.435
CEL29064.1
Hypothetical protein; Alanine racemase, N-terminal domain.
 
     0.401
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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