Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL29210.1 | quiA | SRM1_02561 | SRM1_02559 | Acetyltransferase (GNAT) family protein. | Quinate/shikimate dehydrogenase (quinone). | 0.403 |
| moaA_4 | pqqB | SRM1_05263 | SRM1_05260 | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | 0.978 |
| moaA_4 | pqqC | SRM1_05263 | SRM1_05261 | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.985 |
| moaA_4 | pqqD | SRM1_05263 | SRM1_05262 | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | Coenzyme PQQ synthesis protein D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway. | 0.987 |
| moaA_4 | quiA | SRM1_05263 | SRM1_02559 | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | Quinate/shikimate dehydrogenase (quinone). | 0.523 |
| oprB_1 | oprB_2 | SRM1_02558 | SRM1_04302 | Porin B precursor. | Porin B precursor. | 0.632 |
| oprB_1 | oprB_3 | SRM1_02558 | SRM1_04509 | Porin B precursor. | Porin B precursor. | 0.637 |
| oprB_1 | quiA | SRM1_02558 | SRM1_02559 | Porin B precursor. | Quinate/shikimate dehydrogenase (quinone). | 0.722 |
| oprB_2 | oprB_1 | SRM1_04302 | SRM1_02558 | Porin B precursor. | Porin B precursor. | 0.632 |
| oprB_2 | oprB_3 | SRM1_04302 | SRM1_04509 | Porin B precursor. | Porin B precursor. | 0.550 |
| oprB_2 | quiA | SRM1_04302 | SRM1_02559 | Porin B precursor. | Quinate/shikimate dehydrogenase (quinone). | 0.545 |
| oprB_3 | oprB_1 | SRM1_04509 | SRM1_02558 | Porin B precursor. | Porin B precursor. | 0.637 |
| oprB_3 | oprB_2 | SRM1_04509 | SRM1_04302 | Porin B precursor. | Porin B precursor. | 0.550 |
| oprB_3 | quiA | SRM1_04509 | SRM1_02559 | Porin B precursor. | Quinate/shikimate dehydrogenase (quinone). | 0.525 |
| pqqB | moaA_4 | SRM1_05260 | SRM1_05263 | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.978 |
| pqqB | pqqC | SRM1_05260 | SRM1_05261 | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | 0.997 |
| pqqB | pqqD | SRM1_05260 | SRM1_05262 | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Coenzyme PQQ synthesis protein D; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway. | 0.986 |
| pqqB | quiA | SRM1_05260 | SRM1_02559 | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | Quinate/shikimate dehydrogenase (quinone). | 0.651 |
| pqqC | moaA_4 | SRM1_05261 | SRM1_05263 | Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | Cyclic pyranopterin monophosphate synthase; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). | 0.985 |
| pqqC | pqqB | SRM1_05261 | SRM1_05260 | Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ. | Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family. | 0.997 |
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