Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gbuC_3Glycine betaine/carnitine transport binding protein GbuC precursor. (297 aa)    
Predicted Functional Partners:
opuAB_2
Glycine betaine transport system permease protein OpuAB.
 
 
 0.950
opuAB_1
Glycine betaine transport system permease protein OpuAB.
 
 
 0.949
opuAA
Glycine betaine transport ATP-binding protein OpuAA.
 
 0.940
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
 0.938
gbuC_4
Glycine betaine/carnitine transport binding protein GbuC precursor.
  
  
 0.904
CEL31946.1
Hypothetical protein.
  
    0.712
gbuC_1
Glycine betaine/carnitine transport binding protein GbuC precursor.
 
 
 
0.691
opuAC_2
Glycine betaine-binding protein OpuAC precursor.
 
 
 
0.685
soxD
Sarcosine oxidase, delta subunit family.
  
    0.644
antA
Anthranilate 1,2-dioxygenase large subunit.
  
    0.643
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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