Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL29493.1 | kdgK_1 | SRM1_02844 | SRM1_02813 | Xylose isomerase-like TIM barrel. | 2-dehydro-3-deoxygluconokinase. | 0.536 |
CEL29493.1 | kdgK_2 | SRM1_02844 | SRM1_02845 | Xylose isomerase-like TIM barrel. | 2-dehydro-3-deoxygluconokinase. | 0.993 |
CEL29493.1 | kdgR | SRM1_02844 | SRM1_02843 | Xylose isomerase-like TIM barrel. | HTH-type transcriptional regulator KdgR. | 0.873 |
CEL29493.1 | ttuB_1 | SRM1_02844 | SRM1_02846 | Xylose isomerase-like TIM barrel. | Putative tartrate transporter. | 0.822 |
gltB | kdgK_1 | SRM1_00466 | SRM1_02813 | Glutamate synthase [NADPH] large chain precursor. | 2-dehydro-3-deoxygluconokinase. | 0.416 |
gltB | kdgK_2 | SRM1_00466 | SRM1_02845 | Glutamate synthase [NADPH] large chain precursor. | 2-dehydro-3-deoxygluconokinase. | 0.416 |
gltB | kdgR | SRM1_00466 | SRM1_02843 | Glutamate synthase [NADPH] large chain precursor. | HTH-type transcriptional regulator KdgR. | 0.852 |
gltB | ptsI_1 | SRM1_00466 | SRM1_00840 | Glutamate synthase [NADPH] large chain precursor. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.419 |
kdgK_1 | CEL29493.1 | SRM1_02813 | SRM1_02844 | 2-dehydro-3-deoxygluconokinase. | Xylose isomerase-like TIM barrel. | 0.536 |
kdgK_1 | gltB | SRM1_02813 | SRM1_00466 | 2-dehydro-3-deoxygluconokinase. | Glutamate synthase [NADPH] large chain precursor. | 0.416 |
kdgK_1 | kdgR | SRM1_02813 | SRM1_02843 | 2-dehydro-3-deoxygluconokinase. | HTH-type transcriptional regulator KdgR. | 0.666 |
kdgK_1 | ptsI_1 | SRM1_02813 | SRM1_00840 | 2-dehydro-3-deoxygluconokinase. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.435 |
kdgK_1 | ptsI_2 | SRM1_02813 | SRM1_01059 | 2-dehydro-3-deoxygluconokinase. | Phosphoenolpyruvate-protein phosphotransferase. | 0.551 |
kdgK_1 | ptsI_3 | SRM1_02813 | SRM1_04625 | 2-dehydro-3-deoxygluconokinase. | Phosphoenolpyruvate-protein phosphotransferase. | 0.551 |
kdgK_1 | rbsB_1 | SRM1_02813 | SRM1_02077 | 2-dehydro-3-deoxygluconokinase. | D-ribose-binding periplasmic protein precursor. | 0.456 |
kdgK_1 | rbsC_1 | SRM1_02813 | SRM1_02079 | 2-dehydro-3-deoxygluconokinase. | Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. | 0.513 |
kdgK_2 | CEL29493.1 | SRM1_02845 | SRM1_02844 | 2-dehydro-3-deoxygluconokinase. | Xylose isomerase-like TIM barrel. | 0.993 |
kdgK_2 | gltB | SRM1_02845 | SRM1_00466 | 2-dehydro-3-deoxygluconokinase. | Glutamate synthase [NADPH] large chain precursor. | 0.416 |
kdgK_2 | kdgR | SRM1_02845 | SRM1_02843 | 2-dehydro-3-deoxygluconokinase. | HTH-type transcriptional regulator KdgR. | 0.869 |
kdgK_2 | ptsI_1 | SRM1_02845 | SRM1_00840 | 2-dehydro-3-deoxygluconokinase. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.435 |
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