STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_3Oligopeptide-binding protein AppA precursor. (622 aa)    
Predicted Functional Partners:
yejB_2
Inner membrane ABC transporter permease protein YejB.
  
 0.961
yejE_2
Inner membrane ABC transporter permease protein YejE.
 
  
 0.959
gsiA_3
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  
 0.935
yejB_1
Inner membrane ABC transporter permease protein YejB.
  
 0.837
yejE_1
Inner membrane ABC transporter permease protein YejE.
 
  
 0.826
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  
 0.776
ppiC_1
Peptidyl-prolyl cis-trans isomerase C.
     
 0.501
dppB
Dipeptide transport system permease protein DppB.
 
  
 0.498
appA_2
Oligopeptide-binding protein AppA precursor.
 
  
 
0.471
fhlA
Formate hydrogenlyase transcriptional activator.
       0.465
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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