Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL27897.1 | CEL29865.1 | SRM1_01229 | SRM1_03219 | Hypothetical protein. | Putative DNA ligase-like protein/MT0965. | 0.886 |
| CEL27897.1 | lepB | SRM1_01229 | SRM1_01038 | Hypothetical protein. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.431 |
| CEL27897.1 | polA | SRM1_01229 | SRM1_00115 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.950 |
| CEL29865.1 | CEL27897.1 | SRM1_03219 | SRM1_01229 | Putative DNA ligase-like protein/MT0965. | Hypothetical protein. | 0.886 |
| CEL29865.1 | dnaN | SRM1_03219 | SRM1_00057 | Putative DNA ligase-like protein/MT0965. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.996 |
| CEL29865.1 | gmhB | SRM1_03219 | SRM1_00063 | Putative DNA ligase-like protein/MT0965. | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase. | 0.884 |
| CEL29865.1 | holB | SRM1_03219 | SRM1_04099 | Putative DNA ligase-like protein/MT0965. | DNA polymerase III subunit delta'. | 0.958 |
| CEL29865.1 | lepB | SRM1_03219 | SRM1_01038 | Putative DNA ligase-like protein/MT0965. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.918 |
| CEL29865.1 | polA | SRM1_03219 | SRM1_00115 | Putative DNA ligase-like protein/MT0965. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
| CEL29865.1 | polB | SRM1_03219 | SRM1_03668 | Putative DNA ligase-like protein/MT0965. | DNA polymerase II. | 0.955 |
| CEL29865.1 | xthA_1 | SRM1_03219 | SRM1_01960 | Putative DNA ligase-like protein/MT0965. | Exodeoxyribonuclease III. | 0.985 |
| CEL29865.1 | xthA_2 | SRM1_03219 | SRM1_03494 | Putative DNA ligase-like protein/MT0965. | Exodeoxyribonuclease III. | 0.912 |
| CEL29865.1 | ykoV | SRM1_03219 | SRM1_02524 | Putative DNA ligase-like protein/MT0965. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.954 |
| dnaN | CEL29865.1 | SRM1_00057 | SRM1_03219 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Putative DNA ligase-like protein/MT0965. | 0.996 |
| dnaN | holB | SRM1_00057 | SRM1_04099 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III subunit delta'. | 0.999 |
| dnaN | polA | SRM1_00057 | SRM1_00115 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| dnaN | polB | SRM1_00057 | SRM1_03668 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase II. | 0.999 |
| dnaN | xthA_1 | SRM1_00057 | SRM1_01960 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.933 |
| dnaN | xthA_2 | SRM1_00057 | SRM1_03494 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III. | 0.933 |
| gmhB | CEL29865.1 | SRM1_00063 | SRM1_03219 | D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase. | Putative DNA ligase-like protein/MT0965. | 0.884 |
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