Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEL29882.12,3-diketo-L-gulonate TRAP transporter small permease protein YiaM. (175 aa)    
Predicted Functional Partners:
yiaO
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
 
 0.994
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
 
 0.992
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
 
 0.958
CEL31509.1
Tripartite ATP-independent periplasmic transporters, DctQ component.
     
 0.913
dctP
C4-dicarboxylate-binding periplasmic protein precursor.
 
  
 0.771
gntK
Thermoresistant gluconokinase.
    
  0.658
araB_1
L-arabinolactonase.
 
     0.613
garD
D-galactarate dehydratase.
 
     0.599
CEL28007.1
Tripartite tricarboxylate transporter TctA family protein.
 
   
 0.509
CEL28009.1
Tripartite tricarboxylate transporter family receptor.
 
     0.492
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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