Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dsrE | dsrF | SRM1_03417 | SRM1_03418 | Putative sulfurtransferase DsrE. | Intracellular sulfur oxidation protein DsrF. | 0.999 |
| dsrE | trpD_1 | SRM1_03417 | SRM1_03421 | Putative sulfurtransferase DsrE. | Anthranilate phosphoribosyltransferase. | 0.894 |
| dsrE | tusB | SRM1_03417 | SRM1_03419 | Putative sulfurtransferase DsrE. | Protein TusB. | 0.999 |
| dsrE | tusE | SRM1_03417 | SRM1_03420 | Putative sulfurtransferase DsrE. | Sulfurtransferase TusE; Part of a sulfur-relay system. | 0.974 |
| dsrF | dsrE | SRM1_03418 | SRM1_03417 | Intracellular sulfur oxidation protein DsrF. | Putative sulfurtransferase DsrE. | 0.999 |
| dsrF | trpD_1 | SRM1_03418 | SRM1_03421 | Intracellular sulfur oxidation protein DsrF. | Anthranilate phosphoribosyltransferase. | 0.872 |
| dsrF | tusB | SRM1_03418 | SRM1_03419 | Intracellular sulfur oxidation protein DsrF. | Protein TusB. | 0.998 |
| dsrF | tusE | SRM1_03418 | SRM1_03420 | Intracellular sulfur oxidation protein DsrF. | Sulfurtransferase TusE; Part of a sulfur-relay system. | 0.969 |
| pabB | trpA | SRM1_01846 | SRM1_00163 | Aminodeoxychorismate synthase component 1. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.938 |
| pabB | trpB | SRM1_01846 | SRM1_00162 | Aminodeoxychorismate synthase component 1. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.948 |
| pabB | trpC | SRM1_01846 | SRM1_05216 | Aminodeoxychorismate synthase component 1. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.990 |
| pabB | trpD_1 | SRM1_01846 | SRM1_03421 | Aminodeoxychorismate synthase component 1. | Anthranilate phosphoribosyltransferase. | 0.934 |
| pabB | trpG | SRM1_01846 | SRM1_05218 | Aminodeoxychorismate synthase component 1. | Anthranilate synthase component 2. | 0.998 |
| trpA | pabB | SRM1_00163 | SRM1_01846 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Aminodeoxychorismate synthase component 1. | 0.938 |
| trpA | trpB | SRM1_00163 | SRM1_00162 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.999 |
| trpA | trpC | SRM1_00163 | SRM1_05216 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.997 |
| trpA | trpD_1 | SRM1_00163 | SRM1_03421 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Anthranilate phosphoribosyltransferase. | 0.904 |
| trpA | trpE | SRM1_00163 | SRM1_05221 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.959 |
| trpA | trpG | SRM1_00163 | SRM1_05218 | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | Anthranilate synthase component 2. | 0.978 |
| trpB | pabB | SRM1_00162 | SRM1_01846 | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | Aminodeoxychorismate synthase component 1. | 0.948 |
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