Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bioI | fadD_1 | SRM1_03251 | SRM1_03500 | Biotin biosynthesis cytochrome P450. | Long-chain-fatty-acid--CoA ligase. | 0.664 |
| bioI | grsA | SRM1_03251 | SRM1_03513 | Biotin biosynthesis cytochrome P450. | Gramicidin S synthase 1. | 0.745 |
| bioI | lgrB_1 | SRM1_03251 | SRM1_01934 | Biotin biosynthesis cytochrome P450. | Linear gramicidin synthase subunit B. | 0.790 |
| bioI | lgrD | SRM1_03251 | SRM1_00182 | Biotin biosynthesis cytochrome P450. | Linear gramicidin synthase subunit D. | 0.989 |
| bioI | rplC | SRM1_03251 | SRM1_05179 | Biotin biosynthesis cytochrome P450. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.632 |
| bioI | rplF | SRM1_03251 | SRM1_05164 | Biotin biosynthesis cytochrome P450. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.939 |
| bioI | rplM | SRM1_03251 | SRM1_04742 | Biotin biosynthesis cytochrome P450. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.644 |
| fabD_1 | fadB_3 | SRM1_04106 | SRM1_03790 | Malonyl CoA-acyl carrier protein transacylase. | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 0.488 |
| fabD_1 | fadD_1 | SRM1_04106 | SRM1_03500 | Malonyl CoA-acyl carrier protein transacylase. | Long-chain-fatty-acid--CoA ligase. | 0.638 |
| fabD_1 | grsA | SRM1_04106 | SRM1_03513 | Malonyl CoA-acyl carrier protein transacylase. | Gramicidin S synthase 1. | 0.913 |
| fabD_1 | lgrB_1 | SRM1_04106 | SRM1_01934 | Malonyl CoA-acyl carrier protein transacylase. | Linear gramicidin synthase subunit B. | 0.913 |
| fabD_1 | lgrD | SRM1_04106 | SRM1_00182 | Malonyl CoA-acyl carrier protein transacylase. | Linear gramicidin synthase subunit D. | 0.991 |
| fadB_3 | fabD_1 | SRM1_03790 | SRM1_04106 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | Malonyl CoA-acyl carrier protein transacylase. | 0.488 |
| fadB_3 | fadD_1 | SRM1_03790 | SRM1_03500 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | Long-chain-fatty-acid--CoA ligase. | 0.720 |
| fadB_3 | lgrD | SRM1_03790 | SRM1_00182 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | Linear gramicidin synthase subunit D. | 0.743 |
| fadB_3 | rplC | SRM1_03790 | SRM1_05179 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.586 |
| fadB_3 | rplF | SRM1_03790 | SRM1_05164 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.488 |
| fadB_3 | rplM | SRM1_03790 | SRM1_04742 | Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.583 |
| fadD_1 | bioI | SRM1_03500 | SRM1_03251 | Long-chain-fatty-acid--CoA ligase. | Biotin biosynthesis cytochrome P450. | 0.664 |
| fadD_1 | fabD_1 | SRM1_03500 | SRM1_04106 | Long-chain-fatty-acid--CoA ligase. | Malonyl CoA-acyl carrier protein transacylase. | 0.638 |
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