ydjH protein (Pseudomonas fluorescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ydjH

Putative sugar kinase YdjH. (323 aa)

Predicted Functional Partners:

draG_2

0.991

CEL30725.1

0.965

yegW

0.879

purA

0.756

fruA

0.744

rihA

0.714

guaA_2

0.697

rbsB_1

0.613

rbsC_2

0.605

araG

0.597

Your Current Organism:

Pseudomonas fluorescens

NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEL30725.1	draG_2	SRM1_04084	SRM1_04085	Permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	0.947
CEL30725.1	ydjH	SRM1_04084	SRM1_04083	Permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.	Putative sugar kinase YdjH.	0.965
CEL30725.1	yegW	SRM1_04084	SRM1_04086	Permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.	Putative HTH-type transcriptional regulator YegW.	0.892
araG	draG_2	SRM1_04088	SRM1_04085	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	0.419
araG	fruA	SRM1_04088	SRM1_00842	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	PTS system fructose-specific EIIBC component.	0.412
araG	rbsB_1	SRM1_04088	SRM1_02077	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	D-ribose-binding periplasmic protein precursor.	0.978
araG	rbsC_2	SRM1_04088	SRM1_04087	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.999
araG	ydjH	SRM1_04088	SRM1_04083	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Putative sugar kinase YdjH.	0.597
araG	yegW	SRM1_04088	SRM1_04086	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	Putative HTH-type transcriptional regulator YegW.	0.425
draG_2	CEL30725.1	SRM1_04085	SRM1_04084	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	Permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.	0.947
draG_2	araG	SRM1_04085	SRM1_04088	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	0.419
draG_2	rbsC_2	SRM1_04085	SRM1_04087	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.453
draG_2	ydjH	SRM1_04085	SRM1_04083	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	Putative sugar kinase YdjH.	0.991
draG_2	yegW	SRM1_04085	SRM1_04086	ADP-ribosyl-[dinitrogen reductase] glycohydrolase.	Putative HTH-type transcriptional regulator YegW.	0.953
fruA	araG	SRM1_00842	SRM1_04088	PTS system fructose-specific EIIBC component.	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.	0.412
fruA	ydjH	SRM1_00842	SRM1_04083	PTS system fructose-specific EIIBC component.	Putative sugar kinase YdjH.	0.744
guaA_2	purA	SRM1_04632	SRM1_00587	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.942
guaA_2	ydjH	SRM1_04632	SRM1_04083	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.	Putative sugar kinase YdjH.	0.697
purA	guaA_2	SRM1_00587	SRM1_04632	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.	0.942
purA	ydjH	SRM1_00587	SRM1_04083	Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	Putative sugar kinase YdjH.	0.756

page 1 of 3

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About