Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL30767.1 | aroA | SRM1_04126 | SRM1_04021 | ComEC family competence protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.476 |
| CEL30767.1 | sppA | SRM1_04126 | SRM1_04111 | ComEC family competence protein. | Putative signal peptide peptidase SppA. | 0.401 |
| aroA | CEL30767.1 | SRM1_04021 | SRM1_04126 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | ComEC family competence protein. | 0.476 |
| aroA | pheA | SRM1_04021 | SRM1_04023 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Prephenate dehydratase. | 0.999 |
| aroA | sppA | SRM1_04021 | SRM1_04111 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Putative signal peptide peptidase SppA. | 0.435 |
| ftsH | sppA | SRM1_00818 | SRM1_04111 | ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | Putative signal peptide peptidase SppA. | 0.516 |
| lolE_2 | sppA | SRM1_03770 | SRM1_04111 | Lipoprotein-releasing system transmembrane protein LolE. | Putative signal peptide peptidase SppA. | 0.431 |
| mlaE_2 | mlaF | SRM1_00911 | SRM1_00910 | Putative phospholipid ABC transporter permease protein MlaE. | Putative phospholipid import ATP-binding protein MlaF. | 0.992 |
| mlaE_2 | sppA | SRM1_00911 | SRM1_04111 | Putative phospholipid ABC transporter permease protein MlaE. | Putative signal peptide peptidase SppA. | 0.441 |
| mlaF | mlaE_2 | SRM1_00910 | SRM1_00911 | Putative phospholipid import ATP-binding protein MlaF. | Putative phospholipid ABC transporter permease protein MlaE. | 0.992 |
| mlaF | sppA | SRM1_00910 | SRM1_04111 | Putative phospholipid import ATP-binding protein MlaF. | Putative signal peptide peptidase SppA. | 0.422 |
| pheA | aroA | SRM1_04023 | SRM1_04021 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
| pheA | sppA | SRM1_04023 | SRM1_04111 | Prephenate dehydratase. | Putative signal peptide peptidase SppA. | 0.443 |
| ppaX | rluC | SRM1_04112 | SRM1_04113 | Pyrophosphatase PpaX. | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.929 |
| ppaX | sppA | SRM1_04112 | SRM1_04111 | Pyrophosphatase PpaX. | Putative signal peptide peptidase SppA. | 0.800 |
| rluC | ppaX | SRM1_04113 | SRM1_04112 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Pyrophosphatase PpaX. | 0.929 |
| rluC | sppA | SRM1_04113 | SRM1_04111 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Putative signal peptide peptidase SppA. | 0.797 |
| sppA | CEL30767.1 | SRM1_04111 | SRM1_04126 | Putative signal peptide peptidase SppA. | ComEC family competence protein. | 0.401 |
| sppA | aroA | SRM1_04111 | SRM1_04021 | Putative signal peptide peptidase SppA. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.435 |
| sppA | ftsH | SRM1_04111 | SRM1_00818 | Putative signal peptide peptidase SppA. | ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.516 |
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