Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL30763.1 | CEL30765.1 | SRM1_04122 | SRM1_04124 | Hypothetical protein; Belongs to the UPF0434 family. | Biopolymer transport protein ExbD. | 0.750 |
CEL30763.1 | CEL30767.1 | SRM1_04122 | SRM1_04126 | Hypothetical protein; Belongs to the UPF0434 family. | ComEC family competence protein. | 0.849 |
CEL30763.1 | CEL30768.1 | SRM1_04122 | SRM1_04127 | Hypothetical protein; Belongs to the UPF0434 family. | Hypothetical protein. | 0.558 |
CEL30763.1 | exbB_3 | SRM1_04122 | SRM1_04125 | Hypothetical protein; Belongs to the UPF0434 family. | Biopolymer transport protein ExbB. | 0.750 |
CEL30763.1 | kdsB | SRM1_04122 | SRM1_04121 | Hypothetical protein; Belongs to the UPF0434 family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.870 |
CEL30763.1 | lpxK | SRM1_04122 | SRM1_04123 | Hypothetical protein; Belongs to the UPF0434 family. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.750 |
CEL30763.1 | murB | SRM1_04122 | SRM1_04119 | Hypothetical protein; Belongs to the UPF0434 family. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.805 |
CEL30763.1 | pucB | SRM1_04122 | SRM1_04115 | Hypothetical protein; Belongs to the UPF0434 family. | Purine catabolism protein PucB. | 0.484 |
CEL30763.1 | ubiE_1 | SRM1_04122 | SRM1_00438 | Hypothetical protein; Belongs to the UPF0434 family. | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.460 |
CEL30763.1 | yfkJ | SRM1_04122 | SRM1_04120 | Hypothetical protein; Belongs to the UPF0434 family. | Low molecular weight protein-tyrosine-phosphatase YfkJ. | 0.793 |
CEL30765.1 | CEL30763.1 | SRM1_04124 | SRM1_04122 | Biopolymer transport protein ExbD. | Hypothetical protein; Belongs to the UPF0434 family. | 0.750 |
CEL30765.1 | CEL30767.1 | SRM1_04124 | SRM1_04126 | Biopolymer transport protein ExbD. | ComEC family competence protein. | 0.827 |
CEL30765.1 | CEL30768.1 | SRM1_04124 | SRM1_04127 | Biopolymer transport protein ExbD. | Hypothetical protein. | 0.554 |
CEL30765.1 | exbB_3 | SRM1_04124 | SRM1_04125 | Biopolymer transport protein ExbD. | Biopolymer transport protein ExbB. | 0.986 |
CEL30765.1 | kdsB | SRM1_04124 | SRM1_04121 | Biopolymer transport protein ExbD. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.750 |
CEL30765.1 | lpxK | SRM1_04124 | SRM1_04123 | Biopolymer transport protein ExbD. | Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.813 |
CEL30765.1 | murB | SRM1_04124 | SRM1_04119 | Biopolymer transport protein ExbD. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.783 |
CEL30765.1 | pucB | SRM1_04124 | SRM1_04115 | Biopolymer transport protein ExbD. | Purine catabolism protein PucB. | 0.461 |
CEL30765.1 | yfkJ | SRM1_04124 | SRM1_04120 | Biopolymer transport protein ExbD. | Low molecular weight protein-tyrosine-phosphatase YfkJ. | 0.737 |
CEL30767.1 | CEL30763.1 | SRM1_04126 | SRM1_04122 | ComEC family competence protein. | Hypothetical protein; Belongs to the UPF0434 family. | 0.849 |
page 1 of 5