Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL30468.1 | grsA | SRM1_03827 | SRM1_03513 | MbtH-like protein. | Gramicidin S synthase 1. | 0.973 |
CEL30468.1 | lgrB_1 | SRM1_03827 | SRM1_01934 | MbtH-like protein. | Linear gramicidin synthase subunit B. | 0.961 |
CEL30468.1 | lgrB_2 | SRM1_03827 | SRM1_01935 | MbtH-like protein. | Linear gramicidin synthase subunit B. | 0.962 |
CEL30468.1 | lgrB_3 | SRM1_03827 | SRM1_01936 | MbtH-like protein. | Linear gramicidin synthase subunit B. | 0.999 |
CEL30468.1 | lgrB_4 | SRM1_03827 | SRM1_03838 | MbtH-like protein. | Linear gramicidin synthase subunit B. | 0.975 |
CEL30468.1 | lgrD | SRM1_03827 | SRM1_00182 | MbtH-like protein. | Linear gramicidin synthase subunit D. | 0.998 |
CEL30468.1 | npt | SRM1_03827 | SRM1_04190 | MbtH-like protein. | 4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily. | 0.546 |
aroA | lgrD | SRM1_04021 | SRM1_00182 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Linear gramicidin synthase subunit D. | 0.536 |
aroA | npt | SRM1_04021 | SRM1_04190 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily. | 0.529 |
aroA | proA_1 | SRM1_04021 | SRM1_03181 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Gamma-glutamyl phosphate reductase. | 0.430 |
clcD | npt | SRM1_04189 | SRM1_04190 | Carboxymethylenebutenolidase. | 4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily. | 0.487 |
grsA | CEL30468.1 | SRM1_03513 | SRM1_03827 | Gramicidin S synthase 1. | MbtH-like protein. | 0.973 |
grsA | lgrB_3 | SRM1_03513 | SRM1_01936 | Gramicidin S synthase 1. | Linear gramicidin synthase subunit B. | 0.689 |
grsA | lgrB_4 | SRM1_03513 | SRM1_03838 | Gramicidin S synthase 1. | Linear gramicidin synthase subunit B. | 0.667 |
grsA | lgrD | SRM1_03513 | SRM1_00182 | Gramicidin S synthase 1. | Linear gramicidin synthase subunit D. | 0.866 |
grsA | npt | SRM1_03513 | SRM1_04190 | Gramicidin S synthase 1. | 4'-phosphopantetheinyl transferase Npt; Belongs to the P-Pant transferase superfamily. | 0.679 |
lgrB_1 | CEL30468.1 | SRM1_01934 | SRM1_03827 | Linear gramicidin synthase subunit B. | MbtH-like protein. | 0.961 |
lgrB_1 | lgrB_2 | SRM1_01934 | SRM1_01935 | Linear gramicidin synthase subunit B. | Linear gramicidin synthase subunit B. | 0.800 |
lgrB_1 | lgrB_3 | SRM1_01934 | SRM1_01936 | Linear gramicidin synthase subunit B. | Linear gramicidin synthase subunit B. | 0.914 |
lgrB_1 | lgrB_4 | SRM1_01934 | SRM1_03838 | Linear gramicidin synthase subunit B. | Linear gramicidin synthase subunit B. | 0.648 |
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