Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL29084.1 | CEL30910.1 | SRM1_02433 | SRM1_04273 | YCII-related domain protein. | Bacterial transcription activator, effector binding domain. | 0.901 |
| CEL30910.1 | CEL29084.1 | SRM1_04273 | SRM1_02433 | Bacterial transcription activator, effector binding domain. | YCII-related domain protein. | 0.901 |
| CEL30910.1 | CEL30911.1 | SRM1_04273 | SRM1_04274 | Bacterial transcription activator, effector binding domain. | Leucine export protein LeuE. | 0.681 |
| CEL30910.1 | alaC | SRM1_04273 | SRM1_04275 | Bacterial transcription activator, effector binding domain. | Glutamate-pyruvate aminotransferase AlaC. | 0.486 |
| CEL30910.1 | rpoA | SRM1_04273 | SRM1_05155 | Bacterial transcription activator, effector binding domain. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.739 |
| CEL30910.1 | rpoB | SRM1_04273 | SRM1_05186 | Bacterial transcription activator, effector binding domain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.635 |
| CEL30910.1 | rpoC | SRM1_04273 | SRM1_05185 | Bacterial transcription activator, effector binding domain. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.635 |
| CEL30910.1 | rpoD | SRM1_04273 | SRM1_05252 | Bacterial transcription activator, effector binding domain. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.445 |
| CEL30910.1 | rpoH | SRM1_04273 | SRM1_05429 | Bacterial transcription activator, effector binding domain. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.445 |
| CEL30910.1 | rpoS | SRM1_04273 | SRM1_01160 | Bacterial transcription activator, effector binding domain. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.445 |
| CEL30910.1 | rpoZ | SRM1_04273 | SRM1_05690 | Bacterial transcription activator, effector binding domain. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.635 |
| CEL30911.1 | CEL30910.1 | SRM1_04274 | SRM1_04273 | Leucine export protein LeuE. | Bacterial transcription activator, effector binding domain. | 0.681 |
| CEL30911.1 | alaC | SRM1_04274 | SRM1_04275 | Leucine export protein LeuE. | Glutamate-pyruvate aminotransferase AlaC. | 0.537 |
| alaC | CEL30910.1 | SRM1_04275 | SRM1_04273 | Glutamate-pyruvate aminotransferase AlaC. | Bacterial transcription activator, effector binding domain. | 0.486 |
| alaC | CEL30911.1 | SRM1_04275 | SRM1_04274 | Glutamate-pyruvate aminotransferase AlaC. | Leucine export protein LeuE. | 0.537 |
| rpoA | CEL30910.1 | SRM1_05155 | SRM1_04273 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Bacterial transcription activator, effector binding domain. | 0.739 |
| rpoA | rpoB | SRM1_05155 | SRM1_05186 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoC | SRM1_05155 | SRM1_05185 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | rpoD | SRM1_05155 | SRM1_05252 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.993 |
| rpoA | rpoH | SRM1_05155 | SRM1_05429 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.944 |
page 1 of 4