Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmp_1Flavohemoprotein; Belongs to the globin family. (393 aa)    
Predicted Functional Partners:
norR
Anaerobic nitric oxide reductase transcription regulator NorR.
 
   
 0.920
cheV_3
Chemotaxis protein CheV.
  
 
 0.898
bedA
Benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit.
  
 
 0.871
CEL28905.1
Blue-light-activated protein.
  
 
 0.868
rubA1
Rubredoxin-1.
  
  
 0.834
bvgS_1
Virulence sensor protein BvgS precursor.
  
 
 0.814
bvgS_3
Virulence sensor protein BvgS precursor.
  
 
 0.814
hmp_2
Flavohemoprotein.
 
 
0.796
pleC
Non-motile and phage-resistance protein.
  
 
 0.786
CEL29569.1
Blue-light-activated protein.
  
 
 0.752
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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