Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
oprD_7Porin D precursor. (446 aa)    
Predicted Functional Partners:
aaeB_2
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.546
CEL30788.1
Hypothetical protein.
  
     0.541
CEL27537.1
Hypothetical protein.
 
     0.522
tyrR_1
Transcriptional regulatory protein TyrR.
      
 0.513
tagO
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
      
 0.513
ycnE_1
Putative monooxygenase YcnE.
  
     0.510
pglF
UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase.
      
 0.498
rhlA
Rhamnosyltransferase 1 subunit A.
  
     0.492
ycnE_2
Putative monooxygenase YcnE.
  
     0.476
CEL31347.1
Hypothetical protein.
       0.475
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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