Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL31564.1 | yjiA_3 | SRM1_04933 | SRM1_04932 | Hypothetical protein. | Putative GTP-binding protein YjiA. | 0.828 |
| CEL31564.1 | yjiY | SRM1_04933 | SRM1_04934 | Hypothetical protein. | Inner membrane protein YjiY. | 0.984 |
| cobL | yjiA_3 | SRM1_00664 | SRM1_04932 | Precorrin-6Y C(5,15)-methyltransferase [decarboxylating]. | Putative GTP-binding protein YjiA. | 0.459 |
| dksA_1 | folE2 | SRM1_03139 | SRM1_05805 | RNA polymerase-binding transcription factor DksA. | GTP cyclohydrolase FolE2. | 0.491 |
| dksA_1 | yjiA_3 | SRM1_03139 | SRM1_04932 | RNA polymerase-binding transcription factor DksA. | Putative GTP-binding protein YjiA. | 0.425 |
| dksA_2 | yjiA_3 | SRM1_04850 | SRM1_04932 | RNA polymerase-binding transcription factor DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | Putative GTP-binding protein YjiA. | 0.424 |
| folE2 | dksA_1 | SRM1_05805 | SRM1_03139 | GTP cyclohydrolase FolE2. | RNA polymerase-binding transcription factor DksA. | 0.491 |
| folE2 | yjiA_3 | SRM1_05805 | SRM1_04932 | GTP cyclohydrolase FolE2. | Putative GTP-binding protein YjiA. | 0.474 |
| mtsA | rpmB | SRM1_03823 | SRM1_05676 | Metal ABC transporter substrate-binding lipoprotein precursor; Belongs to the bacterial solute-binding protein 9 family. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.475 |
| mtsA | rpsN | SRM1_03823 | SRM1_05166 | Metal ABC transporter substrate-binding lipoprotein precursor; Belongs to the bacterial solute-binding protein 9 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.551 |
| mtsA | yjiA_3 | SRM1_03823 | SRM1_04932 | Metal ABC transporter substrate-binding lipoprotein precursor; Belongs to the bacterial solute-binding protein 9 family. | Putative GTP-binding protein YjiA. | 0.417 |
| rpmB | mtsA | SRM1_05676 | SRM1_03823 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Metal ABC transporter substrate-binding lipoprotein precursor; Belongs to the bacterial solute-binding protein 9 family. | 0.475 |
| rpmB | rpmG | SRM1_05676 | SRM1_05675 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
| rpmB | rpsN | SRM1_05676 | SRM1_05166 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
| rpmB | yjiA_3 | SRM1_05676 | SRM1_04932 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Putative GTP-binding protein YjiA. | 0.459 |
| rpmG | rpmB | SRM1_05675 | SRM1_05676 | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
| rpmG | rpsN | SRM1_05675 | SRM1_05166 | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
| rpmG | yjiA_3 | SRM1_05675 | SRM1_04932 | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | Putative GTP-binding protein YjiA. | 0.424 |
| rpsN | mtsA | SRM1_05166 | SRM1_03823 | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | Metal ABC transporter substrate-binding lipoprotein precursor; Belongs to the bacterial solute-binding protein 9 family. | 0.551 |
| rpsN | rpmB | SRM1_05166 | SRM1_05676 | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
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