Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL27400.1 | CEL28925.1 | SRM1_00727 | SRM1_02273 | RIO1 family protein. | Putative methyltransferase regulatory domain protein. | 0.999 |
| CEL27400.1 | rpsB | SRM1_00727 | SRM1_01129 | RIO1 family protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| CEL27400.1 | rpsE | SRM1_00727 | SRM1_05162 | RIO1 family protein. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| CEL27400.1 | rpsO | SRM1_00727 | SRM1_00829 | RIO1 family protein. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
| CEL28925.1 | CEL27400.1 | SRM1_02273 | SRM1_00727 | Putative methyltransferase regulatory domain protein. | RIO1 family protein. | 0.999 |
| CEL28925.1 | hrpB_1 | SRM1_02273 | SRM1_01407 | Putative methyltransferase regulatory domain protein. | ATP-dependent RNA helicase HrpB. | 0.444 |
| CEL28925.1 | rpsB | SRM1_02273 | SRM1_01129 | Putative methyltransferase regulatory domain protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.964 |
| CEL28925.1 | rpsE | SRM1_02273 | SRM1_05162 | Putative methyltransferase regulatory domain protein. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| CEL28925.1 | rpsO | SRM1_02273 | SRM1_00829 | Putative methyltransferase regulatory domain protein. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
| era | rpsB | SRM1_01040 | SRM1_01129 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
| era | rpsE | SRM1_01040 | SRM1_05162 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| era | rpsF | SRM1_01040 | SRM1_00595 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| era | rpsO | SRM1_01040 | SRM1_00829 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.999 |
| era | rpsP | SRM1_01040 | SRM1_01074 | GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| hrpB_1 | CEL28925.1 | SRM1_01407 | SRM1_02273 | ATP-dependent RNA helicase HrpB. | Putative methyltransferase regulatory domain protein. | 0.444 |
| hrpB_1 | rnd | SRM1_01407 | SRM1_01380 | ATP-dependent RNA helicase HrpB. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.973 |
| hrpB_1 | rpsE | SRM1_01407 | SRM1_05162 | ATP-dependent RNA helicase HrpB. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| hrpB_1 | rpsO | SRM1_01407 | SRM1_00829 | ATP-dependent RNA helicase HrpB. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.655 |
| rnd | hrpB_1 | SRM1_01380 | SRM1_01407 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | ATP-dependent RNA helicase HrpB. | 0.973 |
| rnd | rpsE | SRM1_01380 | SRM1_05162 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.999 |
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