Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEL27984.1 | CEL31869.1 | SRM1_01316 | SRM1_05242 | Hypothetical protein. | PrkA AAA domain protein. | 0.404 |
CEL27984.1 | CEL31871.1 | SRM1_01316 | SRM1_05244 | Hypothetical protein. | SpoVR family protein. | 0.661 |
CEL28040.1 | CEL31871.1 | SRM1_01374 | SRM1_05244 | Hypothetical protein. | SpoVR family protein. | 0.409 |
CEL31869.1 | CEL27984.1 | SRM1_05242 | SRM1_01316 | PrkA AAA domain protein. | Hypothetical protein. | 0.404 |
CEL31869.1 | CEL31870.1 | SRM1_05242 | SRM1_05243 | PrkA AAA domain protein. | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | 0.996 |
CEL31869.1 | CEL31871.1 | SRM1_05242 | SRM1_05244 | PrkA AAA domain protein. | SpoVR family protein. | 0.989 |
CEL31869.1 | cca | SRM1_05242 | SRM1_05245 | PrkA AAA domain protein. | Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.574 |
CEL31869.1 | ldh | SRM1_05242 | SRM1_00960 | PrkA AAA domain protein. | Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.406 |
CEL31870.1 | CEL31869.1 | SRM1_05243 | SRM1_05242 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | PrkA AAA domain protein. | 0.996 |
CEL31870.1 | CEL31871.1 | SRM1_05243 | SRM1_05244 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | SpoVR family protein. | 0.993 |
CEL31870.1 | cca | SRM1_05243 | SRM1_05245 | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.643 |
CEL31871.1 | CEL27984.1 | SRM1_05244 | SRM1_01316 | SpoVR family protein. | Hypothetical protein. | 0.661 |
CEL31871.1 | CEL28040.1 | SRM1_05244 | SRM1_01374 | SpoVR family protein. | Hypothetical protein. | 0.409 |
CEL31871.1 | CEL31869.1 | SRM1_05244 | SRM1_05242 | SpoVR family protein. | PrkA AAA domain protein. | 0.989 |
CEL31871.1 | CEL31870.1 | SRM1_05244 | SRM1_05243 | SpoVR family protein. | Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family. | 0.993 |
CEL31871.1 | cca | SRM1_05244 | SRM1_05245 | SpoVR family protein. | Multifunctional CCA protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.646 |
CEL31871.1 | ldh | SRM1_05244 | SRM1_00960 | SpoVR family protein. | Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.407 |
CEL31871.1 | spmB | SRM1_05244 | SRM1_00100 | SpoVR family protein. | Spore maturation protein B. | 0.498 |
CEL31871.1 | trpS | SRM1_05244 | SRM1_04751 | SpoVR family protein. | Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.409 |
CEL31871.1 | yohC | SRM1_05244 | SRM1_04179 | SpoVR family protein. | Inner membrane protein YohC. | 0.413 |
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