Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_1462 | Lbru_1742 | Lbru_1462 | Lbru_1742 | Polyketide synthase. | HAD-superfamily phosphatase. | 0.999 |
Lbru_1462 | Lbru_2388 | Lbru_1462 | Lbru_2388 | Polyketide synthase. | Polyketide synthase module. | 0.999 |
Lbru_1462 | gltX | Lbru_1462 | Lbru_2141 | Polyketide synthase. | Glutamate tRNA synthetase catalytic subunit; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.401 |
Lbru_1462 | hemA | Lbru_1462 | Lbru_0017 | Polyketide synthase. | Glutamyl tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.694 |
Lbru_1462 | hemB | Lbru_1462 | Lbru_0369 | Polyketide synthase. | Delta-aminolevulinic acid dehydratases (porphobilinogen synthase); Belongs to the ALAD family. | 0.644 |
Lbru_1462 | hemL | Lbru_1462 | Lbru_0679 | Polyketide synthase. | Glutamate-1-semialdehyde-2,1-aminomutase. | 0.938 |
Lbru_1462 | prfA | Lbru_1462 | Lbru_0018 | Polyketide synthase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.448 |
Lbru_1742 | Lbru_1462 | Lbru_1742 | Lbru_1462 | HAD-superfamily phosphatase. | Polyketide synthase. | 0.999 |
Lbru_1742 | Lbru_2388 | Lbru_1742 | Lbru_2388 | HAD-superfamily phosphatase. | Polyketide synthase module. | 0.999 |
Lbru_1742 | hemA | Lbru_1742 | Lbru_0017 | HAD-superfamily phosphatase. | Glutamyl tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.765 |
Lbru_1742 | hemB | Lbru_1742 | Lbru_0369 | HAD-superfamily phosphatase. | Delta-aminolevulinic acid dehydratases (porphobilinogen synthase); Belongs to the ALAD family. | 0.710 |
Lbru_1742 | hemL | Lbru_1742 | Lbru_0679 | HAD-superfamily phosphatase. | Glutamate-1-semialdehyde-2,1-aminomutase. | 0.938 |
Lbru_1742 | prfA | Lbru_1742 | Lbru_0018 | HAD-superfamily phosphatase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.631 |
Lbru_2388 | Lbru_1462 | Lbru_2388 | Lbru_1462 | Polyketide synthase module. | Polyketide synthase. | 0.999 |
Lbru_2388 | Lbru_1742 | Lbru_2388 | Lbru_1742 | Polyketide synthase module. | HAD-superfamily phosphatase. | 0.999 |
Lbru_2388 | hemA | Lbru_2388 | Lbru_0017 | Polyketide synthase module. | Glutamyl tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.699 |
Lbru_2388 | hemB | Lbru_2388 | Lbru_0369 | Polyketide synthase module. | Delta-aminolevulinic acid dehydratases (porphobilinogen synthase); Belongs to the ALAD family. | 0.661 |
Lbru_2388 | hemL | Lbru_2388 | Lbru_0679 | Polyketide synthase module. | Glutamate-1-semialdehyde-2,1-aminomutase. | 0.961 |
gltX | Lbru_1462 | Lbru_2141 | Lbru_1462 | Glutamate tRNA synthetase catalytic subunit; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | Polyketide synthase. | 0.401 |
gltX | hemA | Lbru_2141 | Lbru_0017 | Glutamate tRNA synthetase catalytic subunit; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | Glutamyl tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.827 |
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