Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_0143 | tatA | Lbru_0143 | Lbru_0141 | SCP-2 sterol transfer family protein. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.850 |
Lbru_0143 | tatB | Lbru_0143 | Lbru_0140 | SCP-2 sterol transfer family protein. | TatB protein (twin arginine translocation). | 0.808 |
Lbru_0143 | ubiB | Lbru_0143 | Lbru_0142 | SCP-2 sterol transfer family protein. | Ubiquinone biosynthesis AarF; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.829 |
Lbru_0143 | ubiE | Lbru_0143 | Lbru_0144 | SCP-2 sterol transfer family protein. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.879 |
Lbru_0143 | ycaD | Lbru_0143 | Lbru_0145 | SCP-2 sterol transfer family protein. | Putative MFS-type transporter YcaD. | 0.547 |
Lbru_0513 | Lbru_1276 | Lbru_0513 | Lbru_1276 | 2-acylglycerophosphoethanolamine acyltransferase. | Acetyltransferase. | 0.986 |
Lbru_0513 | Lbru_1462 | Lbru_0513 | Lbru_1462 | 2-acylglycerophosphoethanolamine acyltransferase. | Polyketide synthase. | 0.994 |
Lbru_0513 | pheA | Lbru_0513 | Lbru_2151 | 2-acylglycerophosphoethanolamine acyltransferase. | P-protein. | 0.527 |
Lbru_0513 | trpE | Lbru_0513 | Lbru_0441 | 2-acylglycerophosphoethanolamine acyltransferase. | Anthranilate synthase. | 0.525 |
Lbru_0513 | ubiE | Lbru_0513 | Lbru_0144 | 2-acylglycerophosphoethanolamine acyltransferase. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.568 |
Lbru_0513 | ycaD | Lbru_0513 | Lbru_0145 | 2-acylglycerophosphoethanolamine acyltransferase. | Putative MFS-type transporter YcaD. | 0.496 |
Lbru_1276 | Lbru_0513 | Lbru_1276 | Lbru_0513 | Acetyltransferase. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.986 |
Lbru_1276 | Lbru_1462 | Lbru_1276 | Lbru_1462 | Acetyltransferase. | Polyketide synthase. | 0.999 |
Lbru_1276 | pheA | Lbru_1276 | Lbru_2151 | Acetyltransferase. | P-protein. | 0.598 |
Lbru_1276 | trpE | Lbru_1276 | Lbru_0441 | Acetyltransferase. | Anthranilate synthase. | 0.679 |
Lbru_1276 | ubiE | Lbru_1276 | Lbru_0144 | Acetyltransferase. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.702 |
Lbru_1276 | ycaD | Lbru_1276 | Lbru_0145 | Acetyltransferase. | Putative MFS-type transporter YcaD. | 0.683 |
Lbru_1462 | Lbru_0513 | Lbru_1462 | Lbru_0513 | Polyketide synthase. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.994 |
Lbru_1462 | Lbru_1276 | Lbru_1462 | Lbru_1276 | Polyketide synthase. | Acetyltransferase. | 0.999 |
Lbru_1462 | pheA | Lbru_1462 | Lbru_2151 | Polyketide synthase. | P-protein. | 0.445 |
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