Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_0540 | Lbru_1742 | Lbru_0540 | Lbru_1742 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | HAD-superfamily phosphatase. | 0.431 |
Lbru_0540 | acsB | Lbru_0540 | Lbru_0230 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.672 |
Lbru_0540 | fadH | Lbru_0540 | Lbru_0825 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 2,4-dienoyl-CoA reductase FadH1. | 0.770 |
Lbru_0540 | mmsA | Lbru_0540 | Lbru_0232 | Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase. | 0.799 |
Lbru_1243 | Lbru_1462 | Lbru_1243 | Lbru_1462 | Hypothetical protein. | Polyketide synthase. | 0.639 |
Lbru_1243 | Lbru_1742 | Lbru_1243 | Lbru_1742 | Hypothetical protein. | HAD-superfamily phosphatase. | 0.560 |
Lbru_1243 | Lbru_2388 | Lbru_1243 | Lbru_2388 | Hypothetical protein. | Polyketide synthase module. | 0.499 |
Lbru_1243 | acsB | Lbru_1243 | Lbru_0230 | Hypothetical protein. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.461 |
Lbru_1243 | korA | Lbru_1243 | Lbru_1477 | Hypothetical protein. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.443 |
Lbru_1243 | mmsA | Lbru_1243 | Lbru_0232 | Hypothetical protein. | Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase. | 0.781 |
Lbru_1243 | yfcX | Lbru_1243 | Lbru_0617 | Hypothetical protein. | Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.531 |
Lbru_1462 | Lbru_1243 | Lbru_1462 | Lbru_1243 | Polyketide synthase. | Hypothetical protein. | 0.639 |
Lbru_1462 | Lbru_1742 | Lbru_1462 | Lbru_1742 | Polyketide synthase. | HAD-superfamily phosphatase. | 0.999 |
Lbru_1462 | Lbru_2388 | Lbru_1462 | Lbru_2388 | Polyketide synthase. | Polyketide synthase module. | 0.999 |
Lbru_1462 | acsB | Lbru_1462 | Lbru_0230 | Polyketide synthase. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.868 |
Lbru_1462 | fadH | Lbru_1462 | Lbru_0825 | Polyketide synthase. | 2,4-dienoyl-CoA reductase FadH1. | 0.796 |
Lbru_1462 | fmt | Lbru_1462 | Lbru_2868 | Polyketide synthase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.693 |
Lbru_1462 | korA | Lbru_1462 | Lbru_1477 | Polyketide synthase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.702 |
Lbru_1462 | mmsA | Lbru_1462 | Lbru_0232 | Polyketide synthase. | Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase. | 0.774 |
Lbru_1462 | yfcX | Lbru_1462 | Lbru_0617 | Polyketide synthase. | Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.947 |
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