Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_0454 | Lbru_0455 | Lbru_0454 | Lbru_0455 | Hypothetical protein. | TetR family transporter regulatory protein. | 0.558 |
Lbru_0454 | Lbru_1276 | Lbru_0454 | Lbru_1276 | Hypothetical protein. | Acetyltransferase. | 0.545 |
Lbru_0454 | Lbru_1401 | Lbru_0454 | Lbru_1401 | Hypothetical protein. | Polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.431 |
Lbru_0454 | guaA | Lbru_0454 | Lbru_0457 | Hypothetical protein. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.612 |
Lbru_0454 | guaB | Lbru_0454 | Lbru_0456 | Hypothetical protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.496 |
Lbru_0454 | pykA | Lbru_0454 | Lbru_0241 | Hypothetical protein. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.678 |
Lbru_0455 | Lbru_0454 | Lbru_0455 | Lbru_0454 | TetR family transporter regulatory protein. | Hypothetical protein. | 0.558 |
Lbru_0455 | Lbru_1217 | Lbru_0455 | Lbru_1217 | TetR family transporter regulatory protein. | Rieske 2Fe-2S domain protein. | 0.609 |
Lbru_0455 | Lbru_1276 | Lbru_0455 | Lbru_1276 | TetR family transporter regulatory protein. | Acetyltransferase. | 0.554 |
Lbru_0455 | Lbru_1401 | Lbru_0455 | Lbru_1401 | TetR family transporter regulatory protein. | Polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.560 |
Lbru_0455 | ftsZ | Lbru_0455 | Lbru_2884 | TetR family transporter regulatory protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.687 |
Lbru_0455 | guaA | Lbru_0455 | Lbru_0457 | TetR family transporter regulatory protein. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.570 |
Lbru_0455 | guaB | Lbru_0455 | Lbru_0456 | TetR family transporter regulatory protein. | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.557 |
Lbru_0455 | pth | Lbru_0455 | Lbru_2329 | TetR family transporter regulatory protein. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.752 |
Lbru_0455 | pykA | Lbru_0455 | Lbru_0241 | TetR family transporter regulatory protein. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.558 |
Lbru_0455 | ylpA | Lbru_0455 | Lbru_1705 | TetR family transporter regulatory protein. | Lipoprotein YlpA precursor. | 0.625 |
Lbru_1217 | Lbru_0455 | Lbru_1217 | Lbru_0455 | Rieske 2Fe-2S domain protein. | TetR family transporter regulatory protein. | 0.609 |
Lbru_1217 | Lbru_1276 | Lbru_1217 | Lbru_1276 | Rieske 2Fe-2S domain protein. | Acetyltransferase. | 0.714 |
Lbru_1276 | Lbru_0454 | Lbru_1276 | Lbru_0454 | Acetyltransferase. | Hypothetical protein. | 0.545 |
Lbru_1276 | Lbru_0455 | Lbru_1276 | Lbru_0455 | Acetyltransferase. | TetR family transporter regulatory protein. | 0.554 |
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