Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_0775 | Lbru_0776 | Lbru_0775 | Lbru_0776 | 4-hydroxy-2-oxovalerate aldolase. | Low affinity iron permease. | 0.507 |
Lbru_0776 | Lbru_0775 | Lbru_0776 | Lbru_0775 | Low affinity iron permease. | 4-hydroxy-2-oxovalerate aldolase. | 0.507 |
Lbru_0776 | Lbru_0777 | Lbru_0776 | Lbru_0777 | Low affinity iron permease. | Hypothetical protein. | 0.484 |
Lbru_0776 | Lbru_2285 | Lbru_0776 | Lbru_2285 | Low affinity iron permease. | Hypothetical protein. | 0.555 |
Lbru_0776 | Lbru_2502 | Lbru_0776 | Lbru_2502 | Low affinity iron permease. | Hypothetical protein. | 0.521 |
Lbru_0776 | Lbru_3068 | Lbru_0776 | Lbru_3068 | Low affinity iron permease. | Hypothetical protein. | 0.527 |
Lbru_0776 | copA2 | Lbru_0776 | Lbru_1776 | Low affinity iron permease. | Copper efflux ATPase. | 0.550 |
Lbru_0776 | cueO | Lbru_0776 | Lbru_0491 | Low affinity iron permease. | Multicopper oxidase. | 0.550 |
Lbru_0776 | ykoU | Lbru_0776 | Lbru_2098 | Low affinity iron permease. | Putative ATP-dependent DNA ligase YkoU. | 0.609 |
Lbru_0776 | ykoV | Lbru_0776 | Lbru_0401 | Low affinity iron permease. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.488 |
Lbru_0777 | Lbru_0776 | Lbru_0777 | Lbru_0776 | Hypothetical protein. | Low affinity iron permease. | 0.484 |
Lbru_2285 | Lbru_0776 | Lbru_2285 | Lbru_0776 | Hypothetical protein. | Low affinity iron permease. | 0.555 |
Lbru_2502 | Lbru_0776 | Lbru_2502 | Lbru_0776 | Hypothetical protein. | Low affinity iron permease. | 0.521 |
Lbru_3068 | Lbru_0776 | Lbru_3068 | Lbru_0776 | Hypothetical protein. | Low affinity iron permease. | 0.527 |
Lbru_3068 | ykoU | Lbru_3068 | Lbru_2098 | Hypothetical protein. | Putative ATP-dependent DNA ligase YkoU. | 0.536 |
Lbru_3068 | ykoV | Lbru_3068 | Lbru_0401 | Hypothetical protein. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.409 |
copA2 | Lbru_0776 | Lbru_1776 | Lbru_0776 | Copper efflux ATPase. | Low affinity iron permease. | 0.550 |
copA2 | cueO | Lbru_1776 | Lbru_0491 | Copper efflux ATPase. | Multicopper oxidase. | 0.887 |
cueO | Lbru_0776 | Lbru_0491 | Lbru_0776 | Multicopper oxidase. | Low affinity iron permease. | 0.550 |
cueO | copA2 | Lbru_0491 | Lbru_1776 | Multicopper oxidase. | Copper efflux ATPase. | 0.887 |
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