Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbru_1978Ankyrin repeats (3 copies). (680 aa)    
Predicted Functional Partners:
Lbru_1753
Ankyrin repeats (3 copies).
  
     0.767
Lbru_2786
Hypothetical protein.
  
     0.762
arp
Ankyrin repeat protein.
  
     0.760
Lbru_1868
Ankyrin repeats (3 copies).
  
 
   0.754
Lbru_2186
Ankyrin.
  
     0.705
Lbru_1717
Ankyrin repeats (3 copies).
  
     0.644
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
 
   0.615
Lbru_2896
Ankyrin repeat protein.
  
     0.601
Lbru_1977
Ankyrin repeat-containing protein.
       0.596
Lbru_3120
Ankyrin repeat domain-containing protein.
  
     0.550
Your Current Organism:
Legionella brunensis
NCBI taxonomy Id: 29422
Other names: ATCC 43878, CCUG 31114, CIP 103874, DSM 19236, L. brunensis, NCTC 12240, strain 441-1
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