STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbru_2012SAM-dependent O-methyltransferase. (220 aa)    
Predicted Functional Partners:
phaB_6
Acetyoacetyl CoA reductase.
 
  
   0.803
phaB_2
Acetyoacetyl CoA reductase.
 
  
   0.787
fabG_2
3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.760
phaB_3
Acetyoacetyl CoA reductase.
 
  
   0.715
lly
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.712
phaB_4
Acetoacetyl CoA reductase.
 
  
   0.703
Lbru_2388
Polyketide synthase module.
 
 0.702
phaB2
Acetyoacetyl CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.701
Lbru_1742
HAD-superfamily phosphatase.
  
 
 0.695
Lbru_2166
3-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
   0.647
Your Current Organism:
Legionella brunensis
NCBI taxonomy Id: 29422
Other names: ATCC 43878, CCUG 31114, CIP 103874, DSM 19236, L. brunensis, NCTC 12240, strain 441-1
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