Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbru_2017PhnB protein. (142 aa)    
Predicted Functional Partners:
Lbru_2016
DNA binding protein.
 
  
 0.935
Lbru_2018
Hypothetical protein.
 
    0.867
Lbru_1579
Glyoxalase-like domain protein.
 
     0.579
Lbru_3218
Oxidoreductase,aldo/keto reductase family.
  
 
  0.540
Lbru_2019
Hypothetical protein.
       0.493
Lbru_2376
Glyoxylase.
  
 
 0.415
Lbru_2176
Glyoxylase.
  
 
 0.413
Lbru_2875
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 
 0.413
Lbru_1599
Chromate transporter.
 
  
  0.410
Lbru_2653
Sulfurylase ThiF.
  
 
  0.401
Your Current Organism:
Legionella brunensis
NCBI taxonomy Id: 29422
Other names: ATCC 43878, CCUG 31114, CIP 103874, DSM 19236, L. brunensis, NCTC 12240, strain 441-1
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