Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_0665 | Lbru_1548 | Lbru_0665 | Lbru_1548 | Transmembrane protein. | Transmembrane protein. | 0.705 |
Lbru_0665 | Lbru_2571 | Lbru_0665 | Lbru_2571 | Transmembrane protein. | DNA polymerase III, delta subunit. | 0.765 |
Lbru_0665 | lptD | Lbru_0665 | Lbru_0321 | Transmembrane protein. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.595 |
Lbru_0665 | rlpB | Lbru_0665 | Lbru_2570 | Transmembrane protein. | Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.640 |
Lbru_0665 | zapD | Lbru_0665 | Lbru_0740 | Transmembrane protein. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.522 |
Lbru_0732 | Lbru_1548 | Lbru_0732 | Lbru_1548 | Hypothetical protein. | Transmembrane protein. | 0.572 |
Lbru_0732 | rlpB | Lbru_0732 | Lbru_2570 | Hypothetical protein. | Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.597 |
Lbru_0732 | zapD | Lbru_0732 | Lbru_0740 | Hypothetical protein. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.456 |
Lbru_1548 | Lbru_0665 | Lbru_1548 | Lbru_0665 | Transmembrane protein. | Transmembrane protein. | 0.705 |
Lbru_1548 | Lbru_0732 | Lbru_1548 | Lbru_0732 | Transmembrane protein. | Hypothetical protein. | 0.572 |
Lbru_1548 | Lbru_2571 | Lbru_1548 | Lbru_2571 | Transmembrane protein. | DNA polymerase III, delta subunit. | 0.559 |
Lbru_1548 | lptD | Lbru_1548 | Lbru_0321 | Transmembrane protein. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.591 |
Lbru_1548 | rlpB | Lbru_1548 | Lbru_2570 | Transmembrane protein. | Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.660 |
Lbru_1548 | zapD | Lbru_1548 | Lbru_0740 | Transmembrane protein. | Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity. | 0.514 |
Lbru_2571 | Lbru_0665 | Lbru_2571 | Lbru_0665 | DNA polymerase III, delta subunit. | Transmembrane protein. | 0.765 |
Lbru_2571 | Lbru_1548 | Lbru_2571 | Lbru_1548 | DNA polymerase III, delta subunit. | Transmembrane protein. | 0.559 |
Lbru_2571 | leuS | Lbru_2571 | Lbru_2569 | DNA polymerase III, delta subunit. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.800 |
Lbru_2571 | lptD | Lbru_2571 | Lbru_0321 | DNA polymerase III, delta subunit. | Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.522 |
Lbru_2571 | nadD | Lbru_2571 | Lbru_2572 | DNA polymerase III, delta subunit. | Nicotinate-nucleotide adenylyltransferase NadD; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.866 |
Lbru_2571 | rlpB | Lbru_2571 | Lbru_2570 | DNA polymerase III, delta subunit. | Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane. | 0.884 |
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