Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lbru_2155 | Lbru_2388 | Lbru_2155 | Lbru_2388 | ATP dependent DNA helicase (DEAD box family) Rad3. | Polyketide synthase module. | 0.419 |
Lbru_2155 | Lbru_2711 | Lbru_2155 | Lbru_2711 | ATP dependent DNA helicase (DEAD box family) Rad3. | Putative Sulfatase. | 0.487 |
Lbru_2155 | dnaX | Lbru_2155 | Lbru_2707 | ATP dependent DNA helicase (DEAD box family) Rad3. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.573 |
Lbru_2155 | rpoA | Lbru_2155 | Lbru_2806 | ATP dependent DNA helicase (DEAD box family) Rad3. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
Lbru_2155 | rpoZ | Lbru_2155 | Lbru_3147 | ATP dependent DNA helicase (DEAD box family) Rad3. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.995 |
Lbru_2388 | Lbru_2155 | Lbru_2388 | Lbru_2155 | Polyketide synthase module. | ATP dependent DNA helicase (DEAD box family) Rad3. | 0.419 |
Lbru_2388 | Lbru_2711 | Lbru_2388 | Lbru_2711 | Polyketide synthase module. | Putative Sulfatase. | 0.506 |
Lbru_2388 | Lbru_3121 | Lbru_2388 | Lbru_3121 | Polyketide synthase module. | Putative Smr domain protein. | 0.624 |
Lbru_2388 | rpoA | Lbru_2388 | Lbru_2806 | Polyketide synthase module. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.433 |
Lbru_2499 | Lbru_2711 | Lbru_2499 | Lbru_2711 | Methyltransferase. | Putative Sulfatase. | 0.815 |
Lbru_2710 | Lbru_2711 | Lbru_2710 | Lbru_2711 | Putative Ser/Thr protein kinase. | Putative Sulfatase. | 0.800 |
Lbru_2710 | dnaX | Lbru_2710 | Lbru_2707 | Putative Ser/Thr protein kinase. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.706 |
Lbru_2710 | recR | Lbru_2710 | Lbru_2709 | Putative Ser/Thr protein kinase. | Recombinational DNA repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.800 |
Lbru_2710 | ybaB | Lbru_2710 | Lbru_2708 | Putative Ser/Thr protein kinase. | Nucleoid-associated protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.795 |
Lbru_2711 | Lbru_2155 | Lbru_2711 | Lbru_2155 | Putative Sulfatase. | ATP dependent DNA helicase (DEAD box family) Rad3. | 0.487 |
Lbru_2711 | Lbru_2388 | Lbru_2711 | Lbru_2388 | Putative Sulfatase. | Polyketide synthase module. | 0.506 |
Lbru_2711 | Lbru_2499 | Lbru_2711 | Lbru_2499 | Putative Sulfatase. | Methyltransferase. | 0.815 |
Lbru_2711 | Lbru_2710 | Lbru_2711 | Lbru_2710 | Putative Sulfatase. | Putative Ser/Thr protein kinase. | 0.800 |
Lbru_2711 | Lbru_3121 | Lbru_2711 | Lbru_3121 | Putative Sulfatase. | Putative Smr domain protein. | 0.584 |
Lbru_2711 | dnaX | Lbru_2711 | Lbru_2707 | Putative Sulfatase. | DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.706 |
page 1 of 3