STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcOBenzoate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)    
Predicted Functional Partners:
lvr
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.831
benC
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.616
cbdB
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.613
cbdA
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.558
catC
Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.
 
   
 0.513
catB
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.509
norB
Quinolone resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.492
catA
mRNA 3'-end processing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.483
leuE
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.471
yxeP_2
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
Your Current Organism:
Moraxella ovis
NCBI taxonomy Id: 29433
Other names: ATCC 33078, CCUG 354, DSM 18075, LMG 8381, LMG:8381, M. ovis, NCTC 11227, Neisseria ovis, strain 199/55
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.